FMO10213.5prime Sequence
1057 bp (906 high quality bases) assembled on 2010-11-11
> FMO10213.5prime
CAGTCGACATGAGTCCTGAAATATCCGGCTTCCGGCGGTTCCTGCATTGG
GGCCCCATTACCGCCCTTAGCATCATCAAGTGCATAACGCTGACAACGCT
CTATATGAACTCGATGTGGTGGCCGCCAAATAAATCATTCGCCGGATTCG
CCCACCAGGCCCTCTTCCTGCTCCTTTCCACGCTGGCCACATTCAATTAC
GTCATGGCCACTTTGACTGGTCCCGGACTGATGCCAAAACAGTGGCATCC
CAAGGATCCCAAGGACGCCCAGTTCCTGCAGTACTGCAAAAAGTGCGAGG
GCTACAAGGCACCACGCTCCCATCATTGTCGCAAGTGTGATCGCTGCGTC
AAGAAGATGGACCATCACTGCCCATGGATCAATCACTGCGTTGGCTGGGC
CAACCACGCGTACTTCACATACTTCCTGCTCTTCTCCATCCTGGGCAGCC
TGCAGGGCACCGTGGTGCTATGCTGCTCCTTCTGGCGGGGAATCTACCGC
TACTACTATCTCACCCACGGATTGGCGCACTTGGCTAGCGTGCAGTTCAC
TCTGCTCAGCATCATCATGTGCATTCTGGGCATGGGCCTGGCCATCGGTG
TCGTCATTGGCCTGAGCATGCTGCTGTTCACTCAGCTGAAGACGATTGTA
AACAACCAGACGGGCATAGAGATCTGGATAGTGGACAACGCCATTTACCG
CCGATATAGGAATGCCGACTGCGACGACGAGTTCCTATATCTCTATGATT
TGGGCTGGCGGGCAAATTTGCGACTGGTATTCAATGACGAGTGCCCCCAA
GCGAGGCGATGGCATCGAGTGGCCAGTGGTGGAGGGTTGTGATCAGTATA
CATTGACGCGCGAGCAACTGGCGCAGATGAGGAGAACGAGCTCGAACCCG
CACCTTCAAATGCACCCACGTCTAGTGACTGGTCCGTTGGCTGCCGATCT
TTTCGCAGGTTGGCGTGTTGTGTGGCCGCTCCCTGCTCCGATGAGCAGCA
TCAGCTGCGACCCACGAACATGATCAACGTCACTCGCCACGCAACAACTG
GCTGATC
FMO10213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RA | 1679 | CG5196-RA | 97..1146 | 9..1054 | 4695 | 97.2 | Plus |
| CG5196-RB | 2023 | CG5196-RB | 502..1490 | 70..1054 | 4390 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12410460..12410980 | 337..858 | 2455 | 98.5 | Plus |
| 3R | 32079331 | 3R | 12409255..12409440 | 70..255 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 12410273..12410358 | 253..338 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 12411034..12411217 | 858..1037 | 355 | 89.3 | Plus |
| 3R | 32079331 | 3R | 12408412..12408473 | 9..70 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:02:17 has no hits.
FMO10213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:28 Download gff for
FMO10213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 91..1122 | 9..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:05 Download gff for
FMO10213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 97..1128 | 9..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:55 Download gff for
FMO10213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 97..1128 | 9..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:55 Download gff for
FMO10213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12408412..12408472 | 9..69 | 100 | -> | Plus |
| 3R | 12409255..12409439 | 70..254 | 100 | -> | Plus |
| 3R | 12410275..12410356 | 255..336 | 100 | -> | Plus |
| 3R | 12410460..12410980 | 337..858 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:05 Download gff for
FMO10213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8234134..8234194 | 9..69 | 100 | -> | Plus |
| arm_3R | 8234977..8235161 | 70..254 | 100 | -> | Plus |
| arm_3R | 8235997..8236078 | 255..336 | 100 | -> | Plus |
| arm_3R | 8236182..8236702 | 337..858 | 98 | -> | Plus |
