FMO10214.5prime Sequence
880 bp (694 high quality bases) assembled on 2010-11-11
> FMO10214.5prime
CAGTCGACATGGGGCGCATTTGGTGTTTACTCTTCGTTAGCAGTTTGCTG
CACACTCAGAGCCAAAGTTTTCGCGTTCTGGCTATAAATGAGGCCACTTG
CTCGTCGGACCAATTCCGTTGCGGGAATGGCAACTGCATACCGAACAAAT
GGCGCTGCGATCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAAC
GAATTGTGCAGAGCTCGAACCTGTTCACCGGATGAATATGCCTGCAAGAG
TGGCGAGGGGCAATGTGTTCCTTTGGCCTGGATGTGCGACCAGAGCAAGG
ACTGCAGCGATGGCTCCGACGAGCACAACTGCAACCAGACCTGTCGTGCC
GACGAGTTCACCTGTTGCAATGGACGGTGCATCCAGAAGCGATGGAAGTG
CGACCACGACGACGACTGCGGCGATGGATCCGACGAGAAGGAGTGCCCAG
TGGTGCCCTGCGACTCCGTGGCGGAGCACACCTGCACGAATGGAGCCTGC
ATCGCCAAGCGGTGGGTCTGCGACGGTGATCCGGACTGCTCCGATGGCTC
CGATGAGCGGTCCTGTGCGAATGTGACCAAGACGACCACGCCCTGCACCA
CAGCACGAATACCAGTGCAAGGATCGCATCACCTGCCTGCATCACAGCTC
GCCTCTGCCATGGTGACCGCGACTGTCCCGATGGCGACGATGAGCACCCA
GCCAACTGCTACCACCGTCACCTGTCGGGCGGACCAGTTCCAGTGCGGCG
ACTCCTAGCTGCATTCCAGGACATCTCACCTGCAACGGCGACAGACTGCG
CCGATGGCAGCGACGACGGATGCGATGAGTCTGAGTCTGGGGATCCACCC
ACGCTGATGCTCGCATCCAGCGATCGACTG
FMO10214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RG | 3546 | CG31094-RG | 245..1122 | 9..880 | 3750 | 95.9 | Plus |
| LpR1-RD | 3369 | CG31094-RD | 245..1122 | 9..880 | 3750 | 95.9 | Plus |
| LpR1-RL | 3798 | CG31094-RL | 755..1551 | 90..880 | 3345 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25747007..25747233 | 560..334 | 1105 | 99.1 | Minus |
| 3R | 32079331 | 3R | 25746139..25746393 | 816..560 | 835 | 92.7 | Minus |
| 3R | 32079331 | 3R | 25748103..25748225 | 333..211 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25749269..25749390 | 211..90 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25752061..25752142 | 90..9 | 410 | 100 | Minus |
| 3R | 32079331 | 3R | 25709411..25709513 | 440..338 | 230 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:02:20 has no hits.
FMO10214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:29 Download gff for
FMO10214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 245..1099 | 9..860 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:06 Download gff for
FMO10214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 245..1099 | 9..860 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:57 Download gff for
FMO10214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 245..1099 | 9..860 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:57 Download gff for
FMO10214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25749270..25749389 | 91..210 | 100 | <- | Minus |
| 3R | 25752061..25752142 | 9..90 | 100 | | Minus |
| 3R | 25747007..25747233 | 334..560 | 99 | <- | Minus |
| 3R | 25748103..25748225 | 211..333 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:06 Download gff for
FMO10214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21577783..21577864 | 9..90 | 100 | | Minus |
| arm_3R | 21572729..21572955 | 334..560 | 99 | <- | Minus |
| arm_3R | 21573825..21573947 | 211..333 | 100 | <- | Minus |
| arm_3R | 21574992..21575111 | 91..210 | 100 | <- | Minus |
