FMO10216.5prime Sequence
961 bp (720 high quality bases) assembled on 2010-11-11
> FMO10216.5prime
CAGTCGACATGTCCAACGAGATCTACGACTCCTCCAATTCGCAGCTAAGT
AGCGACGAGTATAGCCACGAGGAGGAGGAATACGACGCTCTAATGGACGC
GGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATCCAAGGGATCCGAGT
CCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCACTGAGAAA
AATGAAAAGCCAGATGACGATGCGGTGCCACCTTCCACGCGCTCAGAAAC
AATTCGGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCTGCCCAATC
TTTACTTCAAGCGTCGCAGTATTCGTTGGCTGCGACCCAATAAAATGGAC
TACAACAGCTATTTTGACGGCCTGAAGGACTTGCTGCCCAAGCGTAAATT
GAAGCACCTGGTTCGCTTCCATGACAGGCAGCGCAGAACCTACGACAGCA
GGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCCGAAGTTGC
AGTCGCAGTCGTAGTCGTAGCTATTCTCGCAGCCGCAGCGGCAGTGGTTC
GCCGGAACTCATTTGCCTTGACGACACGGACAACGAGGATTCGCCTGAGA
AACCAGAGCAAGAGCCGGCAAGGGTTACGCCCATCAAGGAAAATAACCCC
CACCCTTTTTGGCTCCACCCCAACTAAACTACGAGCTGCCAGAAAGGAAG
AAAGCCCCCCCCCCCCCGCCCAACAACGAAAACTGTGCCTCTATCCTCGA
CGAGTTCCTGGTAAGAAGGATCACAGGAACCGGTCTTCGACTACGGTATA
CTCTCTCGTGTCGGGAATTGGCACCGCCTTTTAATATGTATCTGGTCGCG
ACATGCGCCAATGAGGCAGAGTCGCTTGTGGTTGATGCCACTCTTAAAAG
ACGCCGTTCGGTAACACCGCCCGCTAGCGAGAGAAGCGCAACCATGACGT
CGACGCATCAT
FMO10216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 250..1190 | 9..953 | 4010 | 95.6 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 256..1196 | 9..953 | 4010 | 95.6 | Plus |
| RAF2-RB | 4006 | CG4877-RB | 180..1120 | 9..953 | 4010 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16387020..16387641 | 328..953 | 2170 | 92.6 | Plus |
| 3L | 28110227 | 3L | 16386637..16386957 | 9..329 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:02:26 has no hits.
FMO10216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:30 Download gff for
FMO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-RA | 230..1185 | 1..961 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:11 Download gff for
FMO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 172..1127 | 1..961 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:01 Download gff for
FMO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 172..1127 | 1..961 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:01 Download gff for
FMO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16386629..16386956 | 1..328 | 98 | -> | Plus |
| 3L | 16387021..16387648 | 329..961 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:11 Download gff for
FMO10216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16379729..16380056 | 1..328 | 98 | -> | Plus |
| arm_3L | 16380121..16380748 | 329..961 | 93 | | Plus |
