FMO10218.5prime Sequence
978 bp (676 high quality bases) assembled on 2010-11-11
> FMO10218.5prime
CAGTCGACATGCAAAGCCTGGACTCCTCATGCCAAGAAGCCGACTTTATT
ATAAATGACACGCTCAAAAAGTTAAAGGGTTCCAGCAACGCGGACCATGT
CCAGGGCCTAGCGGTCCACGCCCACGGTTCGGGTGTCCACCAGACGCAGT
TCGTCCAGTACGGCACGTCTGGATCCTCGCCGCAGCTGCAGCCGCAGCAG
TCCTACCATCAGCTGCATCCCACGCTCCAGCAGCAGCAGTTCGCCTCCTC
GAGCAGCAAATCGTACCTGGAGACCAGCCTATTGCAGGCTATACCACAGA
TTCCTGCCCAGCCGCCCATTTGTATCTTCGATGACGACGAGTCCCCCACC
GAGGGCACTGGCGGCTCACTGGGCAGCCTGCTCACGGAGCCGACCTCGGC
CACGCCCAGCGGCCTGCCCACTGCAATTGCTCCGTCGCCCTCCTCGTGCT
CATCCTCCACACCAACGATGTCGAACTTCAACTCAATCACGTCGCCGTCC
CCGGTGGTGCCCGATCTTCTGCTGTCGACACCGCCGGGCGTTAACTCCAG
TCTAAGCACTAGCTCAACGGGAGCGGCCAGTGTGTCCAGCAAGAAGTCCG
AGAAGCGGCCACCCTCCGCCAACCCCCCCAACCAGTGGAGGCGGCCACCA
CCTGCACCATCATCACCTCCACCAGACGCCCCCTCCCCACCGTCCTGGCA
TCTCCCACGTCCCCGCCCAGCAAGCGCCAGATGTCCAATAGCAGTAGCAA
GGAGAGCAGCTCCTCTAGTCTCAGCTCAGCTATACCCGCCGCACCATTCT
TTATAGTCATCTCGTCCTCGCAATCAGCGCGCGCTGGCGCCGGCGCTGCC
TCCTCCAATAGCAACAGCAAGCCACCTTCATCCGTCTGCCAGTCGGGCAA
CAGCCACCTCCTCTCCCCTGCTCGAGAAATAAGGTACCTACTACCTGCAC
TGCTGAGCATCGACCTAAACTACTTTGC
FMO10218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt20-RC | 7335 | CG17689-RC | 642..1610 | 8..978 | 4160 | 95.6 | Plus |
| Spt20-RD | 7161 | CG17689-RD | 642..1610 | 8..978 | 4160 | 95.6 | Plus |
| Spt20-RA | 8007 | CG17689-RA | 642..1610 | 8..978 | 4160 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13503456..13504387 | 45..978 | 3825 | 95.4 | Plus |
| 3L | 28110227 | 3L | 13503348..13503384 | 8..44 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1087..1146 | 179..238 | 129 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2751..2852 | 138..239 | 122 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6786 | 179..238 | 111 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6807 | 179..238 | 111 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6856 | 180..239 | 111 | 65 | Plus |
FMO10218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:31 Download gff for
FMO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17689-RB | 603..1577 | 1..978 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:14 Download gff for
FMO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt20-RA | 636..1610 | 1..978 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:04 Download gff for
FMO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt20-RA | 636..1610 | 1..978 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:04 Download gff for
FMO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13503456..13504387 | 45..978 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:14 Download gff for
FMO10218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13496556..13497487 | 45..978 | 95 | | Plus |
