FMO10219.5prime Sequence
926 bp (511 high quality bases) assembled on 2010-11-11
> FMO10219.5prime
CAGTCGACATGCCACAGCCAAAGCAAAACCAGCAGAAACAGCCACAGCCA
CAACAGCAAAAGCCGCTGCAGAAACATTCCAGCACCAGCTCCACGATCAT
CGCCAAGCCGGAAAAGGAACGGGAACGCACGCAGACGATCGGCGAAACCG
ACATGGATCAGTCGGTGCTCAATGGACTGGCAGTGGGCGCAGATGGAACC
GCCGGCTACCATGGTCACCAGCGAGAACTTGGTCACAGAGTGTTTGTGAA
CAGATCGCTGCATTTGGAGAATATCAAGTACTATGGCTTCGATATGGACT
ACACCTTGGCAGAGTACAAGTCACCGCAGTATGAGCAGCTGGGCTTCAAC
CTGGTCAAGGAGCGCCTGGTCTTCATGGGCTACCCCAAAGTTTACCTGCA
CTTCGAGTACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTC
TCTACGGGAATCTGCTGAAAGTGGCACCCCACGGCAACATCCTGGTCTGC
GTTCATGGCTTCCAGCTCATCACACATCACCAGGTGTACGAGTTGTATCC
CAACAAGTTCTTGAAACTGGACCACCCCCGTGTCTATGTCCTGAATACTC
TCTTCAATCTTCCTGAAACCTATCTCCTTGCCTGTCTCCCCCCACACCTC
TTACCAACACCACCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGC
CCCCCCCCCCCCTACCTACAAGTCTATTTTCCACCCCGTGCGACGTGCCG
TCGACTGGGTGCACTCGATGGCGATCTGAATTTTTTTTATTATTCAGATA
GGCTCACTATGCGCACCCAAGATGAGAGTATGCCCACCGTCCCTTCCCGA
ATCCGGGAGTCGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATAC
GTACACAACGAGATCATGACCTACCT
FMO10219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RE | 2509 | CG32549-RE | 372..1288 | 9..926 | 3455 | 92.3 | Plus |
CG32549-RH | 2677 | CG32549-RH | 771..1462 | 234..926 | 2345 | 90 | Plus |
CG32549-RG | 2806 | CG32549-RG | 900..1591 | 234..926 | 2345 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18403985..18404214 | 238..9 | 1135 | 99.6 | Minus |
X | 23542271 | X | 18392549..18392765 | 526..310 | 890 | 94 | Minus |
X | 23542271 | X | 18392370..18392481 | 638..527 | 500 | 96.4 | Minus |
X | 23542271 | X | 18391836..18391939 | 926..824 | 395 | 94.2 | Minus |
X | 23542271 | X | 18392837..18392914 | 312..235 | 390 | 100 | Minus |
X | 23542271 | X | 18392056..18392124 | 780..713 | 205 | 89.9 | Minus |
Blast to na_te.dros performed 2014-11-26 17:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6853..6947 | 11..106 | 180 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2595..2678 | 27..108 | 163 | 70.9 | Plus |
FMO10219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:32 Download gff for
FMO10219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RE | 1186..1265 | 848..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:16 Download gff for
FMO10219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RE | 1209..1288 | 848..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:05 Download gff for
FMO10219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RE | 1209..1288 | 848..926 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:05 Download gff for
FMO10219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18403985..18404224 | 1..238 | 97 | | Minus |
X | 18391836..18391915 | 848..926 | 98 | == | Minus |
X | 18392056..18392160 | 676..780 | 83 | <- | Minus |
X | 18392335..18392481 | 527..675 | 90 | <- | Minus |
X | 18392549..18392762 | 313..526 | 93 | <- | Minus |
X | 18392837..18392910 | 239..312 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:16 Download gff for
FMO10219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18285869..18285948 | 848..926 | 98 | == | Minus |
arm_X | 18286089..18286193 | 676..780 | 83 | <- | Minus |
arm_X | 18286368..18286514 | 527..675 | 90 | <- | Minus |
arm_X | 18286582..18286795 | 313..526 | 93 | <- | Minus |
arm_X | 18286870..18286943 | 239..312 | 100 | <- | Minus |
arm_X | 18298018..18298257 | 1..238 | 97 | | Minus |