FMO10223.5prime Sequence
1074 bp (736 high quality bases) assembled on 2010-11-11
> FMO10223.5prime
CAGTCGACATGCCCTTCGGCCGCAAGTCCCCGCTGGAGGCACTGGCCCTT
CCCGGCGTCATGCTCGCCTACAAGTACAGCCAGTTCCGCCAGCGCCGCCG
GGAGGCCGCCAGCCGACGGGTCACCGAGCGCGAACTCTCGGCGCTGCACC
ATAAAATCGACAAACTACTGAGTAAACTGGAGGAGGAAAGCGAGCCGGAT
CCTCCAACCTCCCAGGAGGACGAATGTGTGATCTGCATCAATGCCCGGGC
CACCATGCAGACATCGCCATGTGGCCACCGCGTCGTCTGCCGCCGCTGCT
TTGTGAAGACCATTCAGAGTGCGGTGGCCCAACGACTGTTGCCCCTTCGC
TGCGTCATTTGTCGAGCGCGGGTCAATCGTCTGTCCTCGTCCTCGGGCAC
TTGGCGAATCCAGGAGTCGGCCAGCAGCTACTCAATGGGCGCCAAGAGTT
GGGCCTCCGCCGGAGCACGCCGCCGGCGGTGTGGTACCCTCGGCGAGCTC
CTACTCGATGAACGATGCGCACAGCGGCCACCATTCGTTCCACCAGCCCA
CGCTGCACAAGTCGGCGGTGGGACGGCATCACCCGCATCATTACGCCGCC
CGAGGATCAGCCCATGCTCGAGTCTCCCACTCGGATAGCTTGTACTCGAT
GAGCTCGACGGGATCGGCGGCTTCATCGGCCTCCGGTTATTCACTTTTAT
TTAATATTTCTTCCATATCGAGCAACGGTCCCTGCTCACCGGCCTCGCCG
GCGTGGCTTCCTTCTTCTATCATCTGGCACCGCCATCTCCCACCACCCCA
CTATTTTATTCATATTCTGGCCTCACCCCACTCCCATCGGGATCATCGGG
CAGTTCTCTTTCACCGCGGGAAAATGGAACTTCACATTCCGCATCATGGT
GGGTGTCCCATTGGTTTGCTCCCGCTGCCTGTGCCTAGATAATTGTCTCA
CACGCTCACCAATAGCCCATCCACGCCCCATTTCCCGTTCATCGTCGAGC
GGAAGTGGGGGAGGAGGAGTGGGCCAACGGCCACCGGTCAGCGTTACCAG
GTGCAACTGATGACGCCCTTACGT
FMO10223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8910-RA | 3406 | CG8910-RA | 448..1493 | 9..1067 | 4310 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16877180..16878037 | 1024..159 | 3280 | 94.6 | Minus |
| 2R | 25286936 | 2R | 16894119..16894269 | 159..9 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:02:15 has no hits.
FMO10223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:28 Download gff for
FMO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 440..1471 | 1..1044 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:03 Download gff for
FMO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 441..1472 | 1..1044 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:53 Download gff for
FMO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 441..1472 | 1..1044 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:53 Download gff for
FMO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16877163..16878037 | 159..1044 | 94 | <- | Minus |
| 2R | 16894120..16894276 | 1..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:03 Download gff for
FMO10223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12764668..12765542 | 159..1044 | 94 | <- | Minus |
| arm_2R | 12781625..12781781 | 1..158 | 97 | | Minus |
