FMO10226.5prime Sequence
1074 bp (942 high quality bases) assembled on 2010-11-11
> FMO10226.5prime
CAGTCGACATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCG
CAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGG
CATGAATGCCGCCGTGCGAGCCTGTGTCCGTATGGCCATCTATTTGGGCT
GCAAGGTCTACTTCATTCGTGAAGGCTACCAGGGCATGGTGGATGGTGGC
GACTGCATCCAGGAAGCCAACTGGGCCTCAGTCTCATCCATTATCCATCG
TGGTGGCACCATCATTGGCTCCGCCCGTTGCCAGGACTTCCGTGAGCGTC
AGGGTCGCTTGAAAGCCGCTAACAACCTGATTCAGCGAGGAATCACCAAT
CTGGTGGTCATTGGAGGCGATGGCTCCCTCACGGGCGCCAATCTGTTCCG
TCAGGAGTGGTCCAGCCTGTTGGACGAGCTGGTCAAGAACAAGACCATTA
CCACCGAGCAGCAGGAGAAGTTCAATGTCCTGCACATCGTTGGATTGGTT
GGCTCCATCGACAACGATTTCTGTGGCACTGACATGACCATCGGCACGGA
CACGGCACTACATCGCATCATCGAGGCAATCGATGCCATCTCCAGTACAG
CCTACTCCCATCAGCGCACCTTCATCATGGAGGTCATGGGTCGTCACTGC
GGTTACTTAGCCATATCGGCAGCCATAGCCACAGAGGCTGATTTTATGTT
CATACCCGCCCCCGCCGGTGTCAGTCAATTGGAAGGACGAGATCTGTGTC
AAGCTCCACCACGAGCGATCTGCTGGCCAGCGTCTGAACATCGTGATTGT
GGCCGAGGGAGCCATGGATCGCCGAGGGTCATCCCATCACAGCCGAGGAT
GTAAAGAAGTGATCGACGAGCGTCTGAGCACGATGCCCGCATCACTGTCT
TGGGTCACGTGCAGCGCGGTGGCAATCCCAGTGCCTTCGATCGTATCTTC
GCCCTGCCGCATGGGGAGCTGAGACACTTGGGCCCTGATGGAGCCACCAA
GACTCGGTGCCAGTGGTCATCTCTCTGACGCACAGCGGTCGCGTGCGCTG
ATGGATGGCGTACAAGCGCACCTA
FMO10226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RC | 3188 | CG4001-RC | 560..1630 | 9..1072 | 4755 | 97.1 | Plus |
| Pfk-RB | 3508 | CG4001-RB | 560..1630 | 9..1072 | 4155 | 93.6 | Plus |
| Pfk-RA | 3217 | CG4001-RA | 634..1659 | 54..1072 | 3930 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10112612..10112960 | 151..499 | 1745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114910..10115101 | 756..946 | 785 | 97.4 | Plus |
| 2R | 25286936 | 2R | 10113015..10113170 | 497..652 | 765 | 99.4 | Plus |
| 2R | 25286936 | 2R | 10111429..10111577 | 9..157 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114125..10114233 | 652..761 | 440 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:03:31 has no hits.
FMO10226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:44 Download gff for
FMO10226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 533..1569 | 9..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:16:02 Download gff for
FMO10226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 560..1596 | 9..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:38 Download gff for
FMO10226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 560..1596 | 9..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:38 Download gff for
FMO10226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10113016..10113170 | 498..652 | 99 | -> | Plus |
| 2R | 10112617..10112958 | 156..497 | 100 | -> | Plus |
| 2R | 10111429..10111575 | 9..155 | 100 | -> | Plus |
| 2R | 10114126..10114234 | 653..762 | 94 | -> | Plus |
| 2R | 10114917..10115105 | 763..951 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:16:02 Download gff for
FMO10226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6000122..6000463 | 156..497 | 100 | -> | Plus |
| arm_2R | 6000521..6000675 | 498..652 | 99 | -> | Plus |
| arm_2R | 6001631..6001739 | 653..762 | 94 | -> | Plus |
| arm_2R | 6002422..6002610 | 763..951 | 97 | -> | Plus |
| arm_2R | 5998934..5999080 | 9..155 | 100 | -> | Plus |
