FMO10229.5prime Sequence
1017 bp (696 high quality bases) assembled on 2010-11-11
> FMO10229.5prime
CAGTCGACATGCCCATTTGCAAAAGTTCACCGGGTACGGCGAGCAACAAA
ACAGCCACGGATATATCCGCCGACCACGTGACGGAAGCGGCCCAGGTGAA
GCGGACGCGGGAGCAGGCCTACTTCAACTCCTACGACTTCGATGCAATCG
AGGTGCTGCCCTACGAGGAGGAGGACGACGAGGCGGGAGGCACCAGTCAC
AGCAGGAGCAGGAGCAGGAGCCAGAGCCGTAGCCAAAGTCGTTGCGGAAG
CAGCAGCAGCCGGAGCAGCAGCACCAGGAGCTACTCCGCAGCCAAGGAGC
CCGTTGCCGGCCACAAGTTTGCCTATCTGCAACGCCTGGGCGCCTTTTTT
GCTCGCAACGGAGGTGGAGCAGGCGAATCGGGATCGGGAGAAGCTGCTGG
TATAGCTGCTCCAAGTGGAGGAGGTGCATCCAACGCGGCGCCCAAGGGAA
GCAGCGAAAATTTTCTACTGCCACGAGCCATGCTTAAATATCAAAGCACG
GCGACACCATCACCCTCGCCATCGTCCACATCCACGGCAGCGGTTGCAAT
GCCACTGAAGAACGGACTGGCCAATGGAATGGGGAATGCAATTGGTCACG
ACCAACAGCTGGAGGCGACCGGCAGCGCCCCCCCCCCCCATCAAGAAGTG
CTCGATTGCGTCCAATGTCAGCAGCACGCATTCCACGGATTCCCGACTCC
CATTCTCATTAGCATCAGTATCAGCATCAGCATCAGCTTCAGCGGCAGCA
TCTGCGACTGCAGCAACATCTGCTGCAGCAGCGGCAGCAGCAGCACAGGC
CGCGCCTGGTTTATGTAGGTGATGGTGGCGGCTCACACTATTCGACGGAC
AAAGCGGCTCGTCCGGGTTATTACAGCTCCAATGTGTGCTCCACTTACTC
GCTGGACGAGCACATCTATTGCGCACCCCCTCATCGAAGACCAGGAAGTA
AAATCAACACCCGTGGCCGCCAGGACAGCGGCAAAAACCACCGCCTCCAG
CCTACCAACGAAAGGTG
FMO10229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30377-RB | 4078 | CG30377-RB | 912..1909 | 8..1014 | 4240 | 95.4 | Plus |
| CG30377-RA | 3414 | CG30377-RA | 248..1245 | 8..1014 | 4240 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7900952..7901440 | 8..496 | 2445 | 100 | Plus |
| 2R | 25286936 | 2R | 7905441..7905871 | 495..927 | 1580 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:03:36 has no hits.
FMO10229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:45 Download gff for
FMO10229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 1..999 | 9..1017 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:16:05 Download gff for
FMO10229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 240..1247 | 1..1017 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:41 Download gff for
FMO10229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 240..1247 | 1..1017 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:41 Download gff for
FMO10229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7900944..7901440 | 1..496 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:16:05 Download gff for
FMO10229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3788449..3788945 | 1..496 | 99 | -> | Plus |
