FMO10230.5prime Sequence
931 bp (690 high quality bases) assembled on 2010-11-11
> FMO10230.5prime
CAGTCGACATGTTGCAATCAACGGTTCCGTCATACCACCATCCCCATCCG
CATCACGGCCACCCTCATGCTCATCCCCATAGCCACCACCATGCGTCGAT
GCACCATGCCCATGCCCACCATGCTGCCGCTGCAGCTGCCGCCCACCAGC
GTGCGGTGCAGCAGGCCAACTATGGTGGTGGAGTCGGCGTGGGCGTTGGC
GTCGGTGTGGGCGTGGGCAGTGGCACGGGCAGCGCCTTCCAAAGGCAGCC
AGCTGCCGGCGGATTCCATCATGGCCATCATCAGGGCCGCATGCCGCGTC
TGAATCGCAGCGTTTCGATGGAGCGTCTTCAGGACTTTGCCACCTACTTC
AGTCCCATTCCGAGCATGGTGGGCGGGGTATCCGATATGTCACCGTATCC
GCACCACTATCCCGGCTACTCCTATCAGGCGAGTCCCTCGAACGGAGCAC
CCGGCACTCCTGCCCAGCATGGTCAGTATGGCAGTGGCGCCAATGCTACC
TTGCACCCACCACCACCACCGCCGCCGCCGCATCACGCTGCCATGTTGCA
TCACCCGAATGCCGCCTTGGGCGACATCTGCCCCACCGGGCAGCCCCACT
ACGGGCACAATCTGGGATCCCCCCCTCCCCTTCAGCATGCATCTGACCAA
CTCCAGTCACGAGGCCGATGGAGCCGCCCCCTCCCCGCCCCTTTTTTTTT
TTTTGTACCACCACCTGATGTACTACGGGAACCCTCATCGGACATTAACC
ATACTGATGGCTTTATTATCTCCATTTTACCGACGACCATCTCCACTTGA
TTTTTCATGAATGACAGCTTCTGTCGCATGGTTGACAACAGCACTAGCAA
CAACTCCTCGGTTCTGGGCTTGCCCAGCAGTGGACATGTTAGCAACGGCT
CGGTAGCTCGGCACATCAGTATGTGTGTATA
FMO10230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 4746 | CG43286-RN | 1293..2201 | 5..915 | 3725 | 94.3 | Plus |
| cnc-RM | 4737 | CG43286-RM | 1284..2192 | 5..915 | 3725 | 94.3 | Plus |
| cnc-RO | 6701 | CG43286-RO | 2416..3324 | 5..915 | 3725 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23191889..23192284 | 678..282 | 1785 | 97.2 | Minus |
| 3R | 32079331 | 3R | 23197286..23197566 | 285..5 | 1360 | 98.9 | Minus |
| 3R | 32079331 | 3R | 23189030..23189129 | 915..817 | 450 | 99 | Minus |
| 3R | 32079331 | 3R | 23191710..23191779 | 801..733 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:03:39 has no hits.
FMO10230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:45 Download gff for
FMO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RB | 840..1758 | 1..923 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:16:07 Download gff for
FMO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RO | 2411..3329 | 1..923 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:43 Download gff for
FMO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RO | 2411..3329 | 1..923 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:43 Download gff for
FMO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23189025..23189144 | 800..923 | 91 | <- | Minus |
| 3R | 23191712..23191783 | 730..799 | 88 | <- | Minus |
| 3R | 23191841..23192281 | 285..729 | 92 | <- | Minus |
| 3R | 23197287..23197569 | 1..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:16:07 Download gff for
FMO10230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19017563..19018003 | 285..729 | 92 | <- | Minus |
| arm_3R | 19023009..19023291 | 1..284 | 98 | | Minus |
| arm_3R | 19014747..19014866 | 800..923 | 91 | <- | Minus |
| arm_3R | 19017434..19017505 | 730..799 | 88 | <- | Minus |
