FMO10233.5prime Sequence
1061 bp (844 high quality bases) assembled on 2010-11-11
> FMO10233.5prime
CAGTCGACATGAAAACGACAATCGTGGAGGAGAGGAGTGTGAATGAAACG
ATAGAAACAATAGCCACGAGCAGTGGCTCCGTCCAGGAGACAATCGAGAT
CGTGAATATCGATGGATCTGTAGCACCAAAGCATCGTCACCATCATCACC
ATCACAGACATCATCATCACCATGAAAGGCAGGAAAATGTTGAAGTTGTG
GCAACAGAGGAAGTGATTCTTGTGGAGAACGCACCGAAATCGAGGAAGCA
TCACCACCACAAGCAGAGGACTTCTCCACCACCGCCCCTGCCGCAAACCT
CACCACCATTCCTCACCCCCACTGAAGAAGTGGGTTTCAATGTGGTGTGG
GAACCCCAGGCCTTTTGGAACCAGCCCTCACCCAATCCCTCCTATGTTCT
AGATCTCTCACAGGATAACGAGGTTGTCGATGCAGTGGAGACTATGGACA
CTACTTCAGCTTCCGATGAATTCACCCATGTTGTTTTTCAATCAGAGACA
AAGGAGTCTATTAGGGAAACACAGAAGCACACTAGAGTGGTGGAGGAGGA
AATAATAATTGATCAATTGGACCCACCACCCTATGCACCACCGCCACTTC
AAGTGCAGACAGGATTCTTTCCAGTGGCTCAGCAGCCCCCACTTTCACCC
ATCGCAGAAGTGGTGCAAACAGATGTGGTGGCGGAATCGGTGGAACCTCC
ACTACCCCCTACATGTTATATTCCCAGAATAAATCTAAAGCCAACGGAAA
CTATTGTCGAGAATGTCGAGGTCATCGTGCCCGCACATATTCAACAAGAG
CCGGAGTTTATTCCGCACCCAGTATTTGTAGGTCAGAATTGTGGAGAACA
TAGAAGTTGCCGCAGCATCTAAGTCATCACTGGGTTTCACCTCAAAAGAG
TTATATCCTCGGACAGGCATGGTGGAGACGATGTGGAAGATACTCGCAGC
TGATATAATGATGATGCTACTGTCAGAGTGCATATCCCGGAATGTGAGTG
GATCGATGTGAAATATAGATGCGATCTCCTTCCTCCTCCACCATGGAATC
GCTACTGATCG
FMO10233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30480-RB | 3460 | CG30480-RB | 49..1113 | 9..1059 | 4475 | 95.8 | Plus |
| CG30480-RA | 2966 | CG30480-RA | 49..1113 | 9..1059 | 4475 | 95.8 | Plus |
| CG30479-RB | 3460 | CG30479-RB | 49..1113 | 9..1059 | 4475 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14677155..14678088 | 942..9 | 4300 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:02:57 has no hits.
FMO10233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:36 Download gff for
FMO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30480-RA | 39..968 | 1..932 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:32 Download gff for
FMO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30480-RA | 42..971 | 1..932 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:16 Download gff for
FMO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30479-RB | 42..971 | 1..932 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:16 Download gff for
FMO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14677150..14678095 | 1..948 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:32 Download gff for
FMO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10564655..10565600 | 1..948 | 97 | | Minus |
