FMO10234.5prime Sequence
1075 bp (888 high quality bases) assembled on 2010-11-11
> FMO10234.5prime
CAGTCGACATGGCCCAGCTGAAGAATGTGGGCCAAGCAGGTCAACAGGCC
GTTCTTGTTGTTGGCCCCATGCTTGCCTCGGCCATGTTGCTCATGGGGCT
GATATTCGCGCTGCTGGGGATCAAGTTCTTCGGCTTCCGGCGGCGACTGA
CTTTCGAGCGATCGCAGGTGCAGCGGCAACAGCAGAATCAGCAGCAGCAA
CAACCGCCGCCACGTTACGCAGCTTTCGAATCGCAGGTTAACGGCACCGA
TACTGCTGTCCATGGAGTGTTCCGACGTCGCAATCTCGAGGAATTCGAAA
GCCCATGGCCATCGGCATCAGCAACGACAGGGAACAACTTCATCAGTGGC
AGTGTTCCAAATCTGCAACTTATTGGCGCCAGCCCAAGACAGCCCAAATC
CACGGAAGAATCACCAGTTTCCTATCGAGAGAAGTCGGAGGCACAACGAC
CGGAGGTGCACAGTGAGCACTATGAATTCTACACCGCTCCACCTACCCGC
AAGCCACCTTCTCCGCCACTACAATCAGAAGTACTAGCTGAAACTGCCTC
GGTAGTTTCACTACCTAAGATACTAGAATCCATCCCTGCTCCACCTCCCA
GGACCATGAGAGGAGCTGCTGCATCCAAGCCTTCAGGACCTGCAGCTTCT
GTCGACACAGCTCCCGAGCCTCCTATCGAACTGGGAATGCCCAACTTCGA
TCACTTTGCTGAAAAGTACGAGTTGTTTAGTGTAAAACCAACGACTGCGC
CCACTAGACCAACACAGTTGCGAAGTAAGAACAGCGGCCGCTATGTGAAG
TTCGAGCCAGTTGATGATGTGCCGGAATTCTCACTCCTGAGGATCCCGTT
CCGGAGTTACTAACTCCAGATGATGGTTTGGGAGGAGCGATGTCAAATAA
CAGCTGTGGATCATAGGGGAGCCATACCCAAGGAAGAAACGGAATCGAAA
GATGACCGCAAGCACCAATGATACCGATCCCTTTGGGGGACCCAGCATAC
AGACTCAGCTTCCTGTCGTGAAATCATTAGCATGTAGTCCGACGGAGCGA
CCTCTAGCTTACAGCCACTTCAAAT
FMO10234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14131-RA | 2532 | CG14131-RA | 147..1183 | 6..1040 | 4805 | 98.1 | Plus |
| CG14131-RB | 2529 | CG14131-RB | 147..1180 | 6..1040 | 4750 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11778422..11779108 | 328..1011 | 3040 | 97.8 | Plus |
| 3L | 28110227 | 3L | 11777304..11777507 | 35..238 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 11778215..11778312 | 234..331 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1087..1145 | 164..223 | 162 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2662 | 157..217 | 161 | 73.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1151 | 157..204 | 150 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6821 | 170..213 | 148 | 81.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6851 | 164..210 | 145 | 78.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1148 | 164..213 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6881..6923 | 165..207 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2424 | 157..204 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1575 | 171..207 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2373 | 164..207 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6770 | 170..204 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6791 | 170..204 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1551 | 166..204 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2472 | 170..204 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2514 | 170..204 | 121 | 82.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1056 | 171..255 | 119 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2826 | 157..210 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2352 | 175..223 | 116 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6824 | 164..204 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2812..2868 | 157..213 | 114 | 66.7 | Plus |
FMO10234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:34 Download gff for
FMO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 1..1026 | 9..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:22 Download gff for
FMO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 141..1175 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:10 Download gff for
FMO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 141..1175 | 1..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:10 Download gff for
FMO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11778218..11778311 | 237..330 | 100 | -> | Plus |
| 3L | 11777306..11777505 | 37..236 | 100 | -> | Plus |
| 3L | 11778425..11779128 | 331..1032 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:22 Download gff for
FMO10234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11770406..11770605 | 37..236 | 100 | -> | Plus |
| arm_3L | 11771318..11771411 | 237..330 | 100 | -> | Plus |
| arm_3L | 11771525..11772228 | 331..1032 | 97 | | Plus |
