Clone FMO10236 Report

Search the DGRC for FMO10236

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:102
Well:36
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31533-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10236.5prime Sequence

1065 bp (779 high quality bases) assembled on 2010-11-11

> FMO10236.5prime
CAGTCGACATGACGGAATCGGCTAACTTTCTATTCGACTTGGTCATCACC
AATCTGAATATTTTTGGCGTAACGATTGACGAACCCGCCAAACTCCTGGT
GGAAACCAAGGTTGCCGGAAAATCAGTGAAGGTAACGTCCAGCCGAATCA
ATGTCGACCAGTTTGTGGCCGGCAGGGAGTTTGAGCTCCCAATGGAAGCA
TCGACATTGCGTCAAAGTCTGGAGGAGAAGGGTTTGACTTTGGCGGGTGT
TTACCAGGGATCAACTCTTGGCAAGGCCACGGGGAACTTCCCTGTGGAGT
TTCTTGACAAGATCAGCCCCACGATGAACGATCTGGTGCACGAAGATACA
CTCGATTTGGTTCGTCGAGTTGTTGTATATGGAACGGTGAGCGTTCTAAT
CCGCTTGACCGTAAAGTGCGAGGAGCACCCAGAGCAGAAGCCTTCAAGGC
AAAGTCTCCCCCGAACCAGCAAATCATCGATGATACTACCGAAGAAAGAG
AAAAGCGGACGAGTCAGTTGTGCTAGCCAGGGCCCGACCTTCAATCCTCA
GGATGTGATGTTTCTCATCGGCGATCCTGATCCTTTACTTCGAATTCCCT
CGGAGCCGTGCTCTGAACTTCTATCCGAAATAGGAGATGAACGCCTGAAG
CTGGACTTGCAGCGCTACAAAACCTTGTTAAAATCGTCTAGCAATCTTTC
CAGATGATGACCGCTGTCCCCACGCAAAAACCCTCATTTATGCAACTTAA
AAAGCTCACCGAGGAGTATTCCCACCATCATTGATTCTGTGACCAAGAAG
TCAAAGAAATGGAACCCGCAATCGAGCTCGTTGGTTCCTACGGAGCCACC
TTCCGATGCGAATGTCATAACTCCATTTTACACACCGCCGCCATATTAAT
TCATGATTCTCGTGAAATCTGGCCATACCTGTTTCTGTTAGATCCGACTT
ATTACATGGCCGTGAAACCTATACGGTCTGTCCTGTCTGCTGGTGCTCCA
TGTCGTGATGCCAAAATATGCACCAATGCTCATCAATGCAATACCTAAAG
CAGTCCCATACCTCC

FMO10236.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31533-RA 2704 CG31533-RA 141..1185 9..1061 4540 96.3 Plus
CG31327-RA 2719 CG31327-RA 639..854 530..747 245 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14156281..14157291 1025..9 4190 96.6 Minus
3R 32079331 3R 14159453..14159640 718..530 205 75.1 Minus
Blast to na_te.dros performed on 2014-11-26 17:02:52 has no hits.

FMO10236.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:35 Download gff for FMO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31533-RA 1..1048 9..1065 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:27 Download gff for FMO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31533-RA 141..1188 9..1065 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:13 Download gff for FMO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31533-RA 141..1188 9..1065 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:13 Download gff for FMO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14156244..14157291 9..1065 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:27 Download gff for FMO10236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9981966..9983013 9..1065 96   Minus