FMO10239.5prime Sequence
1077 bp (770 high quality bases) assembled on 2010-11-11
> FMO10239.5prime
CAGTCGACATGTTTTCTTACTGGACCAAACAGAATATATCAAGCTCAGTA
GATGGAAAAAAGATGGACAAAGTTTCTACCATGAGAAAAAAAAATTCAAC
AAAAGTTAAAATGGAGAAAAAAGAAACAGTTGTACCGATTACAGAAATGC
GTGCTCTGGAATTTCAAGATTTCCTTAAGCGGGTACAGACGTTACAAATG
TCGCACAACGAAAGCCGCGATTTAGTCAATGGACCTAATATCTGCAGTTC
CATGGATATTGAAGTCGGCGAAGAACCTCCTACGACATCTTTTGCCGATA
ACATAGATAAAGCGTGTCCTTTACCAGTGCTGCGATCATCTGATTGTGAT
TGTGTGCCACTTTGTATGACAAATATTCGTGTATCAGTTGGTATTGTCAA
AGACTTAGAAATGATTCTTGAAATGGATCCGAGTATTGTAGATTTGGGTG
ATATTAGCATTGATGAAACTGCAGAACCGCGCATAGTGGGCTTACCTCCA
CTTTCGGGTGGACCGACATTTAAAACTGCTACTCCCACTTCACGAACACA
ACTAAAACTGCAGCTACAACGTGAACAACAGCAACAAATGATGATACAAC
AACAGACATTAGACACTGCTATGGACCCAAAAATGCATCTATTGATCGCC
ACATGTGCATGGGCTTATGGAATCGGAATTCATTGACAGCGGTAGTACCA
GTGCTCGCGCGCACAAGGTCATCCAGTTTAGAACAAATGTCACAGTTAGT
GCAAATGGACAATTTAATTGATTCGTCAAGTGGAGCCAAGCTTAAAGTTC
CTCTTCAAAGTATCGGAGTACATGTCCCACCTCAAGTGCTGCATGTCAGT
ACAGTGCTTGAAAACCCTACAAGGTATCACGTTATCCAAAAGCAAAAGAA
TCAAGTGAGGCAATATCTCAGCGAATCCTTTAGCCGTCTATGTGGGGCAG
TCATACCCAGCGAAATAAAATTAGCAAAATAATTCCGCGTCAACCGGGAA
ATCTCAAATTCATCTTTACAGAAAGGTATTTGCGATCATTGGGAGCGTAC
AAACGATTTGGATGCCAATCGCTGGGA
FMO10239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mitf-RC | 3226 | CG43369-RC | 54..1109 | 9..1065 | 4780 | 97.4 | Plus |
Mitf-RB | 3009 | CG43369-RB | 319..871 | 512..1065 | 2280 | 95.2 | Plus |
Mitf-RA | 4032 | CG43369-RA | 325..877 | 512..1065 | 2280 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1219093..1219595 | 9..511 | 2500 | 99.8 | Plus |
4 | 1348131 | 4 | 1219693..1220023 | 511..843 | 1355 | 95.2 | Plus |
4 | 1348131 | 4 | 1220076..1220189 | 845..957 | 520 | 99.1 | Plus |
4 | 1348131 | 4 | 1220260..1220361 | 965..1065 | 230 | 90.4 | Plus |
Blast to na_te.dros performed 2014-11-26 17:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6847 | 524..605 | 151 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6814 | 512..605 | 130 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2468..2531 | 548..612 | 124 | 67.7 | Plus |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6171..6256 | 948..1033 | 123 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2476 | 542..604 | 121 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2425 | 522..604 | 120 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2444 | 524..641 | 109 | 59.7 | Plus |
FMO10239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:39 Download gff for
FMO10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mitf-RA | 319..883 | 512..1076 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:45 Download gff for
FMO10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mitf-RC | 49..1121 | 1..1076 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:25 Download gff for
FMO10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mitf-RC | 49..1121 | 1..1076 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:25 Download gff for
FMO10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1220076..1220195 | 845..964 | 98 | -> | Plus |
4 | 1219088..1219595 | 1..511 | 99 | -> | Plus |
4 | 1219694..1220024 | 512..844 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:45 Download gff for
FMO10239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1222814..1223321 | 1..511 | 99 | -> | Plus |
arm_4 | 1223420..1223750 | 512..844 | 94 | -> | Plus |
arm_4 | 1223802..1223921 | 845..964 | 98 | -> | Plus |