FMO10241.5prime Sequence
925 bp (672 high quality bases) assembled on 2010-11-11
> FMO10241.5prime
CAGTCGACATGGATGATGATGCAGAATACCAGAAGCTCCGGCGAAACATG
CAGGGAGCTCAAGGATCGAGAGAAGGACATCCAGGATCAAATGATGGCAT
CAGCACAGTAATCTACAGCGCGGAAGGAGAAGAGCTTACCATAAATTGTG
AGGCCGAATCCGAGTCATCCGGCCAGCGAGATCAGTGGAGCAGGGGAGTG
GAGTTCCTCTTCTCCTGCATCGCCCTATCCGTTGGCCTTGGCAATGTCTG
GCGATTTCCGTTCATTGCTCTGGAGAATGGCGGTGGCGCCTTTCTCATAC
CCTACGTGATTGTGCTCCTGCTGATTGGCAGACCGGTTTACTATCTGGAG
GTCATCATTGGTCAGTTCTCGAGCCGTGGTTGCATCAGAGCCTTCGATAT
GGCACCTATAATGAGGGGTATTGCCTATGGTCAGGTGTATTCCACCGCCT
TGGCCACCACCAACTACGCCTGCATTATGGCCTTGACCATCCCATACCCG
GCGGCTACCTTCAGTGAAGTCCTGCCCTGGACATATTGCCTCGTGGAATG
GGGCACAACTTGCGTGGCGACGGGAGCCACAGCTGCCAATGACTCATCCA
TTGTGCAGGGGGTTTCCCCCCCCGACCTGTTTTTCACGCAAACAGTTCTG
AGGGAGCCCGAATCGCTGGACGACACTGCCCCCCCGTATTTCTTTTTGTT
TATCTGGCCCCGTGTCTCCTGGCCACTTGGGTGATCATCGGCACGATCCT
GTCAAAGGGTATTCGCAGTCGGGAAAGCTTCCCCCCTCCTTGTGCTCTTG
TTTCTCTATGTGATCATGATCGTACTGCTCATTCGGGCGGTCACTTTACC
AGGTGCCTGGCAGGAATTGTGTACTTCCTGAAGCCCCAATGGTCCCAGCC
TCCTCCACTCACTCCCCGAGATAAT
FMO10241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8850-RB | 2260 | CG8850-RB | 186..1074 | 9..899 | 3685 | 94.7 | Plus |
| CG8850-RA | 2086 | CG8850-RA | 73..947 | 23..899 | 3615 | 94.7 | Plus |
| CG42700-RJ | 4712 | CG42700-RJ | 4291..4512 | 638..417 | 900 | 93.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12300652..12300938 | 419..133 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 12300374..12300595 | 638..417 | 900 | 93.7 | Minus |
| 2R | 25286936 | 2R | 12300998..12301123 | 134..9 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 12300051..12300310 | 899..638 | 610 | 86.4 | Minus |
| 2L | 23513712 | 2L | 14848742..14848905 | 349..186 | 325 | 79.9 | Minus |
| 2R | 25286936 | 2R | 18730015..18730155 | 350..210 | 210 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:03:16 has no hits.
FMO10241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:40 Download gff for
FMO10241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8850-RB | 112..1009 | 9..910 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:49 Download gff for
FMO10241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8850-RB | 186..1083 | 9..910 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:28 Download gff for
FMO10241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8850-RB | 186..1083 | 9..910 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:28 Download gff for
FMO10241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12300375..12300594 | 418..637 | 93 | <- | Minus |
| 2R | 12300654..12300936 | 135..417 | 100 | <- | Minus |
| 2R | 12300998..12301123 | 9..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:49 Download gff for
FMO10241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8187880..8188099 | 418..637 | 93 | <- | Minus |
| arm_2R | 8188159..8188441 | 135..417 | 100 | <- | Minus |
| arm_2R | 8188503..8188628 | 9..134 | 100 | | Minus |
