FMO10243.5prime Sequence
1002 bp (673 high quality bases) assembled on 2010-11-11
> FMO10243.5prime
CAGTCGACATGCCGAACCGCCAGGACTACGATGCACAGTCCTCGAAGCAC
TCGGAACAGTCCTTCTTCCGCTTCAACCGGGTGGCCAAAGTACCCCTGGG
GGTGGATGACGATGACAGCTACCTGGACATGTCCGATGAGACGGCCCAGC
TCAAGCCGCGCCAGCAGCACTGGGCCAATAAGATGCAATTCGTCCTGGCC
TGCATAGGATACTCGGTGGGTCTGGGCAACGTCTGGCGTTTTCCGTACAT
GTGCTACAAGAGTGGCGGTGGTGTTTTTCTAGTACCTTATTGCATAATAC
TGTTCATATGCAGCATTCCGCTGCTCTTCATGGAGCTGTCCGTTGGCCAA
TACACCGGTCGAGGACCCATTGGAGCACTGGGTCAACTGTGTCCTCTGTT
CAAGGGAGCCGGACTCGCCAGCGTGGTCGTCTCGTTCCTCATGTCCACCT
ACTATCCCGTCATCATAGGCTACTCCATCTACTACTTCTTTACGTCGTTC
AAAACGGAAATGCCCTGGATCGACTGCAACAACAGGTGGAACACGCCCGC
TTGCTGGGTGCCACAGCGCAAGGGGATTAATGCCAGTGCGCCGGACACAT
CTCGCACTCCATCCCACGACTTCTTCAAAAACAAGGTCCTGCAGATCAGC
GGTGGCCTGGAGTATCCCCCCCCCGACCCCCTGTTTATCTATTTGCCTGC
CTGATCTGCGCCTGGCTAATGCTCTACTTCGCCACGTGCAAGTCTATCAA
GTCGTCTGCGAAGTGCGCTACTTCACCGCCCTTTTTCTTTTTTTTGCTGA
TCATCATCCTGATGGTGCGCGCGGTGACCCTGGATGGAGCTGCTGAGGGT
TTGCGCTTCTTCTTCCGTCCCAAGTGGTCGGAGCTGAGAACGCCCACCGT
CCTGTATCACGCCGCATCCCACCACCTTCAACTCGCTGGGCATTACATTC
GGATCCATGATCTTCTTTTGCAGCTACAACAAGTACAACAAACAATATCC
TG
FMO10243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ine-RA | 2272 | CG15444-RA | 156..1151 | 3..1002 | 4150 | 94.9 | Plus |
ine-RF | 3436 | CG15444-RF | 1439..2345 | 92..1002 | 3720 | 94.5 | Plus |
ine-RE | 3458 | CG15444-RE | 1461..2367 | 92..1002 | 3720 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4469249..4469618 | 1002..629 | 945 | 87.2 | Minus |
2L | 23513712 | 2L | 4471978..4472158 | 272..92 | 905 | 100 | Minus |
2L | 23513712 | 2L | 4470993..4471129 | 406..270 | 685 | 100 | Minus |
2L | 23513712 | 2L | 4469832..4469966 | 539..405 | 630 | 97.8 | Minus |
2L | 23513712 | 2L | 4472949..4473037 | 91..3 | 430 | 98.9 | Minus |
2L | 23513712 | 2L | 4469677..4469770 | 626..533 | 410 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:03:21 has no hits.
FMO10243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:42 Download gff for
FMO10243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ine-RA | 150..1149 | 1..1002 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:54 Download gff for
FMO10243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ine-RA | 152..1151 | 1..1002 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:30 Download gff for
FMO10243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ine-RA | 152..1151 | 1..1002 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:30 Download gff for
FMO10243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4469675..4469767 | 536..628 | 94 | <- | Minus |
2L | 4469836..4469965 | 406..535 | 97 | <- | Minus |
2L | 4470994..4471128 | 271..405 | 100 | <- | Minus |
2L | 4471980..4472158 | 92..270 | 100 | <- | Minus |
2L | 4472949..4473037 | 1..91 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:54 Download gff for
FMO10243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4469675..4469767 | 536..628 | 94 | <- | Minus |
arm_2L | 4469836..4469965 | 406..535 | 97 | <- | Minus |
arm_2L | 4470994..4471128 | 271..405 | 100 | <- | Minus |
arm_2L | 4471980..4472158 | 92..270 | 100 | <- | Minus |
arm_2L | 4472949..4473037 | 1..91 | 96 | | Minus |