FMO10247.5prime Sequence
1094 bp (951 high quality bases) assembled on 2010-11-11
> FMO10247.5prime
CAGTCGACATGCTAAATTTAGGCAGTGCCAAAGTTGGCGCTCTGGAGGAG
GCCACCTCACCACCCCCCTTCTCCAAGGACGAGAGCTTCCAGCTGTTGGA
GCGGAGCCCCCACAATCCCGCCATATCACCCACCACCACTGTCCCGCTGG
AGCCCCCCTTCACCACCCCCCTAGCTCCCTTCGACATGGAGCTGATGAAG
CGCCACAATCTCCACGAGCGCTTAACGGGAAAGGAGAGCTTCTGGCGCGG
GCGCGACACTTCGCAGAGATTTCTGGACCAGGAGCAATTATCAGCATCGC
GTGAATCACTCGGTGCCGCCGACAAGAGAGCCCGGTTTGCAGAAAGCAAC
GCCCCCACGCTCCAACTGCCAGAATCTGCCGAGCCCAGGGCCAATGGCAA
AAGACCCACTGGGAACAGGACCAACCCATCGAATCCAGCCGCTCCCCTTC
TGCCAATGACTGATCCGGATTTTGTGAAGGGCAATGTAGGCGGCGTCTAC
GATGATCGCGAGTGCAGCTGCCCCAGGGAGTTCTACCAGCGGGGCGAGAT
TAACACATCACTGTTCTTTGAGGACTGCGTCCGGTCCATTGACTTTGTCC
TGGCCTACAGGATCAATGCGCACGAGCCCACGGAGCTGGAGAACACGGAA
AAGCGTCGTGTTTTCGAGGCGAATCTCATTAGTCAGGGGCTGGAGGTCGA
GTCCAGTCAGAAGGACCAGATCTGGTTCGTTAAGATCCACGCTCCTTTGG
AGGTCCTGCGACGGTATGCGGAAATTCTTATGCTGCGCATGCCCATGAAG
GAGATTCCAGGAATGTCCGTGGTCAATCGATCGACCAAAAGCGTGTTTTC
TAGTCTTAAACATGTTTTCCAATTCTTTCTGCGCAACATCTATGTGGTTT
TTTGTATAATTTTTCCCAAAGCGAGCTCATCGATTCACTGCCATTTACAG
TCGCGATAAGGAGTATCTCTTTGACATCCGACAGATTGTTTCTTTACACC
GCCGTCCGTCCCGCATCGATTGAGTTCATTCTAGAATCGCAGCGATTTCC
TGCCAGATCAACATGACTGCTCGTATTGGACGACTGAATGCCAG
FMO10247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| subdued-RA | 4046 | CG16718-RA | 308..1366 | 9..1067 | 4915 | 98.1 | Plus |
| subdued-RD | 4118 | CG16718-RD | 308..1102 | 9..803 | 3960 | 99.9 | Plus |
| subdued-RB | 3531 | CG16718-RB | 129..851 | 345..1067 | 3235 | 97.3 | Plus |
| subdued-RD | 4118 | CG16718-RD | 1173..1438 | 802..1067 | 965 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19639026..19639415 | 734..345 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 19642078..19642415 | 346..9 | 1690 | 100 | Minus |
| 3R | 32079331 | 3R | 19638267..19638429 | 968..802 | 620 | 92.8 | Minus |
| 3R | 32079331 | 3R | 19638901..19638971 | 803..733 | 340 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:03:00 has no hits.
FMO10247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:37 Download gff for
FMO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16718-RA | 330..1388 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:15:34 Download gff for
FMO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16718-RA | 308..1366 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:18 Download gff for
FMO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| subdued-RA | 308..1366 | 9..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:45:18 Download gff for
FMO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19638092..19638194 | 969..1067 | 91 | <- | Minus |
| 3R | 19638267..19638427 | 804..968 | 93 | <- | Minus |
| 3R | 19638901..19638969 | 735..803 | 98 | <- | Minus |
| 3R | 19639026..19639413 | 347..734 | 100 | <- | Minus |
| 3R | 19642078..19642415 | 9..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:15:34 Download gff for
FMO10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15463814..15463916 | 969..1067 | 91 | <- | Minus |
| arm_3R | 15463989..15464149 | 804..968 | 93 | <- | Minus |
| arm_3R | 15464623..15464691 | 735..803 | 98 | <- | Minus |
| arm_3R | 15464748..15465135 | 347..734 | 100 | <- | Minus |
| arm_3R | 15467800..15468137 | 9..346 | 100 | | Minus |
