FMO10250.5prime Sequence
1079 bp (939 high quality bases) assembled on 2010-11-11
> FMO10250.5prime
CAGTCGACATGCCGGCGGAAATTAAACCATCCGCGCCCGCTGAGCCGGAA
ACGCCGACCAAGAGCAAACCCAAGTCCAGCTCATCCTCGCACGGAAAGCC
TGCCCTAGCACGAGTCACCCTGCTGGATGGCTCCCTTCTGGACGTGTCCA
TTGATCGCAAAGCCATTGGCCGTGATGTGATCAACTCAATCTGCGCCGGT
CTGAACCTCATCGAAAAGGACTACTTTGGTCTGACCTATGAGACGCCCAC
AGATCCGCGCACTTGGCTGGATCTGGAGAAGCCGGTATCCAAGTTCTTCC
GCACGGACACTTGGCCTCTCACCTTCGCCGTCAAGTTCTATCCGCCGGAG
CCATCGCAGCTGAAGGAGGACATCACGCGCTACCATTTGTGCCTGCAGGT
GCGCAATGACATCCTGGAGGGTCGACTGCCCTGCACATTCGTCACCCACG
CTCTGCTCGGATCCTACTTGGTGCAGTCGGAGATGGGCGACTACGATGCA
GAGGAAATGCCCACCAGGGCCTACCTGAAGGACTTCAAGATCGCTCCAAA
TCAGACGGCTGAGTTGGAGGATAAGGTCATGGATCTTCACAAGACCCACA
AGGGACAATCGCCCGCCGAGGCTGAGCTACACTACCTGCAGAATGCCAAG
AAGCTGGCCATGTACGGCGTGGACTTGCATCCCGCTAAGGATTCTGAGGG
CCTGGACATCATGCTGGGCGTTTGTGCCTCCGGTTTGCTCGTCTACCGCG
CTAAATTGCGCATCAACCGCTTTGCCTGGCCCAAGATTCTGAAGATCTCC
TACAAGCACCTCCCATTTCTACATCAAGATCCGACCGGGTGAATTCGAGC
AGTACGAATCCACCATTGGCTTTAAGCTGGCCAACCATCGTGCCGCCAAG
AAACTGTGGAAATCCTGCGTGCAGCACCACCACCTTCTTCCTTCCTGATG
ATCCCTCGAACCGGTCAGCAGTCCAGATGTTCCCAGTCTTCGGTCCACCT
ATCGCTACAAGGGTTCGCACTCAAGCCGAGAGCCGGAACCACCCGTGGAA
TCGTATCCTCGAAGTTTCATAAGAACTCT
FMO10250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cora-RG | 5893 | CG11949-RG | 372..1429 | 9..1066 | 4855 | 97.8 | Plus |
cora-RF | 5605 | CG11949-RF | 372..1429 | 9..1066 | 4855 | 97.8 | Plus |
cora-RE | 2902 | CG11949-RE | 372..1429 | 9..1066 | 4855 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19235763..19236209 | 156..602 | 2235 | 100 | Plus |
2R | 25286936 | 2R | 19236481..19236778 | 751..1049 | 930 | 94.1 | Plus |
2R | 25286936 | 2R | 19235516..19235662 | 9..155 | 735 | 100 | Plus |
2R | 25286936 | 2R | 19236267..19236419 | 602..754 | 720 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:59:56 has no hits.
FMO10250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:00 Download gff for
FMO10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cora-RA | 361..1435 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:22 Download gff for
FMO10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cora-RE | 363..1437 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:32 Download gff for
FMO10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cora-RE | 363..1437 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:43:32 Download gff for
FMO10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19235507..19235662 | 1..155 | 97 | -> | Plus |
2R | 19235763..19236208 | 156..601 | 100 | -> | Plus |
2R | 19236267..19236419 | 602..754 | 98 | -> | Plus |
2R | 19236485..19236752 | 755..1025 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:22 Download gff for
FMO10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15123012..15123167 | 1..155 | 97 | -> | Plus |
arm_2R | 15123268..15123713 | 156..601 | 100 | -> | Plus |
arm_2R | 15123772..15123924 | 602..754 | 98 | -> | Plus |
arm_2R | 15123990..15124257 | 755..1025 | 94 | -> | Plus |