FMO10254.5prime Sequence
1028 bp (685 high quality bases) assembled on 2010-11-11
> FMO10254.5prime
CAGTCGACATGATGGAACTTTTGTCAAACAATTCGGTTCCGCAACAAATG
GCCAGCAGCAATGCGCCGAGCGCCAACAATGTGGCCCACTCCTCAACGGC
CAACGGAAGTGGAGGCGGCAGTGTGAGCAGCAATGCCAGCAACTCCTCCG
AGCGACTGCTGGCGGGCATCCTGGAGAGCTTTCCCGCCTGGGACCTCAAC
GTGGGACTACTGCCCAACGTGGGCCAGAGCTCACCACCACGCGCAGACTT
CTTTATCAATAACTTCCTGGGCGGCCTGGACACGCATGGCGACTTCAGCA
TTGGACCCATTGGCAGCGGTGCCCGCAGCAATCCGAAGATGTCGCCAGAG
TCATCTAACAACTCGAGCATCAGCTGCGGTTGGTGCGAGGTTAGTGCTTC
AATACGCTGCCTGGAGTGCAACGAGTTCATGTGCAACGACTGCCTAAGGG
CACATCGCAACAGTCCGCTGTCCTCCAACCACTCGATCGCGTCCTTGCCC
ACGCCCATTGGAGCCTCGCCCACGGGTGGCAGCTCGGTAAATGCACACAC
TCCGCCCAGCGGCAACTTTATCTGCGACATACACAACGAGATGTTGCGCT
ACGTACCCGACCACTGCCGGAAATTGGTGTGTCAGTGCTGCACACTGCAC
GAGCACAAGGACCCCCCCCCCCTTTTCTATTTTTAGCTTTATGGTGGGCT
CGAAGGAGAAGCTGGAGGGCGCCATTGAGAGCAGCCAGGTGGGCACGCGC
TGCATTAAGAGCAGCATTCACCAAGCGTTGTTTTTTCATCCGGCTTATCG
AGCGCAATTGCAGCGAGCTGAGCGATAATATACGCAAGGCATTCCGTCAG
TTTATCATTGCCATCGAGGACCGCGAGCGTCTCCTCCCCGCACTTTGTGT
ATATTGCTTCTGCCAGCGTCGTCTGGGCCATCCTACACGATCAGATGGCA
AGCTTAAAGGTCTGCTCTCGCCGGGACTCTCCGAAACGTCCGATCTGCCT
TAGCAAGGTGGCCGAACATGCCTGCACA
FMO10254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wech-RE | 4316 | CG42396-RE | 300..1308 | 9..1026 | 4280 | 95.3 | Plus |
| wech-RD | 6021 | CG42396-RD | 224..1232 | 9..1026 | 4280 | 95.3 | Plus |
| wech-RC | 7593 | CG42396-RC | 554..1562 | 9..1026 | 4280 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7485028..7485817 | 1026..228 | 2965 | 93.7 | Minus |
| 2R | 25286936 | 2R | 7485885..7486105 | 229..9 | 1105 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 577..654 | 862..785 | 111 | 63.7 | Minus |
FMO10254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:02 Download gff for
FMO10254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 338..1353 | 1..1027 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:28 Download gff for
FMO10254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 547..1562 | 1..1027 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:37 Download gff for
FMO10254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 547..1562 | 1..1027 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:43:37 Download gff for
FMO10254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7485885..7486112 | 1..229 | 98 | | Minus |
| 2R | 7485026..7485815 | 230..1027 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:28 Download gff for
FMO10254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3372531..3373320 | 230..1027 | 93 | <- | Minus |
| arm_2R | 3373390..3373617 | 1..229 | 98 | | Minus |
