FMO10256.5prime Sequence
964 bp (711 high quality bases) assembled on 2010-11-11
> FMO10256.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGCAGACGGTG
ACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCACATCGGCTG
TGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGATGGCGGCG
TGAAGAGCATTGTCAATAAACAATACAACACCCCGCCTGGCATTTACAGC
GATGAATCTATTGCGGAAACACTCTCGGCCCACGCGGAGGTTTTGGCTGG
CGGTGTGCTCGGCGTCAACTTCAAGAAGAACGACAAGGCATACCAGGGCG
ATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCGGCCAGTCC
CACCCCCCAACCACACAGTCCCGCCAACTTCTACTGGACACAGAGCCACG
CAATCGGCGGCCACCCCCGACCCACTCCACTGCACCACCAGCACCACCAG
CCTCAGCAGGATGAGCGGATTGGTGTACCATTGCAGTCAAATACACTGGC
GCCTGATGCGACCCAGGCCCAGCTTGCCCGCGTCCCCGAAAGATAACGAG
GACCACGCCACACACGATCAGCACGAGCAGCCCGATCCGCGCATCATTGT
GCTGCCCATCTGCCCCGGGCCTCCAGGGGCCCGAGTATAAGCTGAAATGC
CGCTGCACCCGCCG
FMO10256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-RV | 3701 | CG37-RV | 206..1147 | 9..949 | 4220 | 96.8 | Plus |
| Zasp52-RO | 1963 | CG37-RO | 206..1147 | 9..949 | 4220 | 96.8 | Plus |
| Zasp52-RN | 4637 | CG37-RN | 206..1147 | 9..949 | 4220 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15779375..15779658 | 941..659 | 1040 | 92.6 | Minus |
| 2R | 25286936 | 2R | 15783088..15783245 | 428..271 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 15783315..15783468 | 271..118 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 15781773..15781906 | 562..429 | 625 | 97.8 | Minus |
| 2R | 25286936 | 2R | 15803359..15803471 | 121..9 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15780992..15781080 | 650..562 | 415 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:11 has no hits.
FMO10256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:03 Download gff for
FMO10256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp-RE | 197..1157 | 2..962 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:32 Download gff for
FMO10256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RN | 201..1161 | 2..962 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:40 Download gff for
FMO10256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RN | 201..1161 | 2..962 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:43:40 Download gff for
FMO10256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15803361..15803476 | 2..119 | 96 | | Minus |
| 2R | 15779352..15779658 | 659..962 | 91 | <- | Minus |
| 2R | 15780985..15781079 | 563..658 | 93 | <- | Minus |
| 2R | 15781773..15781906 | 429..562 | 97 | <- | Minus |
| 2R | 15783088..15783244 | 272..428 | 100 | <- | Minus |
| 2R | 15783315..15783466 | 120..271 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:32 Download gff for
FMO10256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11690866..11690981 | 2..119 | 96 | | Minus |
| arm_2R | 11666857..11667163 | 659..962 | 91 | <- | Minus |
| arm_2R | 11668490..11668584 | 563..658 | 93 | <- | Minus |
| arm_2R | 11669278..11669411 | 429..562 | 97 | <- | Minus |
| arm_2R | 11670593..11670749 | 272..428 | 100 | <- | Minus |
| arm_2R | 11670820..11670971 | 120..271 | 100 | <- | Minus |
