FMO10257.5prime Sequence
1038 bp (686 high quality bases) assembled on 2010-11-11
> FMO10257.5prime
CAGTCGACATGTCGGATATTCTCGCAGAAACACAAGCCGCGAACAGAGAT
TCAACAATTTGGCACCAATGGTGTCGCCTGTGCTCCAAGGAGCATCCGAC
AAATCAAAATGTATTCTTCAGGGAGGCGAAACAAAACTCCTGGGCGAGCA
CAATGGCCATGACCATTGGCAAGTACTTTTGGGTCGATATCAAAAGGGAG
GACGAGCTGAGCAATTTTCTGTGCTCCGAATGCTTCACATTGATGGACTG
CCTCATCGAGTTTTCGGAGAGGGTTCGCAAAGTGCAGATCCTTTTCAGCA
AATTGCAGTTGTTACAGTCTAATAATTTGATGGATTATGAGAAAATTCGA
GAGGACTGCGGTGTGGCAACCGATGGATGGAAGCATATAATGCTCGGAGC
CGTAGACGAAAGTCTTCCCCAGAATGACGAAGTATTCATCAGCGAGGAAC
AACCAATAGTCTCACAAACAGAAACATCCAGTAAAATGAAAAGTGAAATC
CTAATGATACCAAATTTTTTGGTGGAAAAACAATGTCTTCAGGAAAAACA
AGACTTTCCTAAAGAGGAAGATGTTATTGAAGAAGAAATGCAAATTTCTG
GGGTGGAAGAGGAAATCCTAGAACACCATGTGGAAGAAGATCTTGCCGAG
GAAGAGGTTGACACTGTGGAGGAAGAGATTGACACTGTTGTTTTATTTTT
TTTGAAGCTGTGGAGGAAGAGTTGGAAACCCCCGACGCTACAGATTGCTT
AGTGGAGGAATTGGAGCACATGACAGAGGATCGCTATATCCACGAATTTT
TATATTATATAAGAAAGCCAAGTTTCAGATTTCAACATGGAAACATATGA
AATAGTACAACACAATCCGCAAAAAGAACCCGTAGAAACAAAGACACCGT
GCATCTATCCCACCCACCAGAGGAAACCAAGGAAGATCTCTCCCGAGAGC
ATGTAACCGATGGAGGAGGATGAAATATCAGAGGTACCAGCCCATGTATA
AGTGGCATATTTGCCAAAAGGCCGGTATCAGGAACCCC
FMO10257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6254-RA | 2006 | CG6254-RA | 71..1093 | 9..1037 | 4300 | 95.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10160199..10161026 | 1020..189 | 3220 | 94.4 | Minus |
| 3R | 32079331 | 3R | 10161082..10161261 | 188..9 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:14 has no hits.
FMO10257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:04 Download gff for
FMO10257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 68..1090 | 9..1037 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:34 Download gff for
FMO10257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 71..1093 | 9..1037 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:43 Download gff for
FMO10257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 71..1093 | 9..1037 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:43:43 Download gff for
FMO10257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10160184..10161026 | 189..1037 | 94 | <- | Minus |
| 3R | 10161082..10161261 | 9..188 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:34 Download gff for
FMO10257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5985906..5986748 | 189..1037 | 94 | <- | Minus |
| arm_3R | 5986804..5986983 | 9..188 | 100 | | Minus |
