FMO10258.5prime Sequence
1011 bp (598 high quality bases) assembled on 2010-11-11
> FMO10258.5prime
CAGTCGACATGCGGGCGGTGCGCCGGGCGAATGCAACTGGTTCCTTCTCC
TGGATCGGATCCGATGGCTGGAGTGCCCGGAATTTGGTGTCCGACGACTA
CGAGCCGGAGGTGGAAGGCACGCTGTCTGTGCAGCCGCAGGCGAATCCGG
TGCGCGGGTTCGAGGAGTACTTCCTCAGTCTGACGGTGGAGAACAATCAA
CGCAATCCCTGGTTTGTGGAATTCTGGGAGGATCACTTTCAGTGCCGATA
TCCCGGCAGTACGAGCACTCCGTACAATAACTACACCAAACAGTGCACCA
CAAAGGAGCGACTTTCACGCCAGAACACTGACTTCGAGGACCAGTTGCAG
TTTGTCAGCGATGCGGTGATGGCATTTGCATACGCCCTAAGGGATATGCA
CCGCGACCTGTGCGGCGGAGGTCCTTCTCTCTGCGAGGCCACATCCCCAA
CGAAGGGTGCAGACTTGCTGAAATATTTGCGAAAAGTGGAGTTTGAGGGC
CTCAGCGGCGACGAGTTCCGCTTCGACGGGAACGGCGACGGTCCCGCCCG
GTACAACATCATCCACTTCAAGCAGTCCCAGGCGGGACAGTACCCCCCCC
CTCCAAAGTGGGCGAGTACACCGAGGGCGAGCTGCGGCTTAATATGACGG
ACGCCCCCCCTTATTATTTTATTTCTAAGCCGCCGGAGTCTGTCTGCAGC
CTGCCATGTCTTGTGGGTCATGCCAATAATTACTTGTACGGCGAGAGCTG
CTGCCGCCATATGTTTCATATTGCACAACCTATCAAATCCGCCCCCCCGG
ATGACGAGACCCATTGCAAGCTGTGCAAGCTGGGCACTCTTCCCGACGCC
CACAGCAGTACTGCCCCCCCCATCTCGTATTATATATTAATCCACCCGGA
GTCCGCTTGGGCATCGGGTGCTATGGCGTTCAGTGCGACCGGGATCTTAG
TAACGCTCTTCGTAATGGGCGTATTTGTCAGGCCCCACCGACCACCCTCC
ATAGTGCTGTG
FMO10258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtt-RG | 7328 | CG30361-RG | 3527..4493 | 9..983 | 3860 | 93.8 | Plus |
| mtt-RF | 5422 | CG30361-RF | 1621..2587 | 9..983 | 3860 | 93.8 | Plus |
| mtt-RE | 6368 | CG30361-RE | 2567..3533 | 9..983 | 3860 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8482855..8483028 | 392..219 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8481948..8482098 | 650..498 | 595 | 94.1 | Minus |
| 2R | 25286936 | 2R | 8481216..8481399 | 982..796 | 560 | 91.5 | Minus |
| 2R | 25286936 | 2R | 8483132..8483242 | 219..109 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 8483601..8483704 | 112..9 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 8482605..8482718 | 499..386 | 465 | 93.9 | Minus |
| 2R | 25286936 | 2R | 8481675..8481751 | 753..677 | 295 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:17 has no hits.
FMO10258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:04 Download gff for
FMO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mXr-RE | 2182..3164 | 1..995 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:35 Download gff for
FMO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2561..3543 | 1..995 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:44 Download gff for
FMO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2561..3543 | 1..995 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:43:44 Download gff for
FMO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8483132..8483240 | 111..219 | 100 | <- | Minus |
| 2R | 8483603..8483708 | 1..110 | 96 | | Minus |
| 2R | 8481216..8481407 | 787..982 | 91 | <- | Minus |
| 2R | 8481644..8481751 | 677..786 | 88 | == | Minus |
| 2R | 8481948..8482097 | 499..650 | 94 | <- | Minus |
| 2R | 8482606..8482712 | 392..498 | 94 | <- | Minus |
| 2R | 8482856..8483027 | 220..391 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:35 Download gff for
FMO10258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4370637..4370745 | 111..219 | 100 | <- | Minus |
| arm_2R | 4371108..4371213 | 1..110 | 96 | | Minus |
| arm_2R | 4368721..4368912 | 787..982 | 91 | <- | Minus |
| arm_2R | 4369149..4369256 | 677..786 | 88 | == | Minus |
| arm_2R | 4369453..4369602 | 499..650 | 94 | <- | Minus |
| arm_2R | 4370111..4370217 | 392..498 | 94 | <- | Minus |
| arm_2R | 4370361..4370532 | 220..391 | 100 | <- | Minus |
