FMO10262.5prime Sequence
1086 bp (876 high quality bases) assembled on 2010-11-11
> FMO10262.5prime
CAGTCGACATGTTGGATCGATGCGAAATGCCGATCCAGCTGGACAACGAG
AAGTTGCGGCGGGATGTTCGATTGTCGGGCTCTCGACTTGATTTGCCACA
ACTCTGTAATGGATCCCGTCGGTTGGATGGCCACAACAACCATGTGGCTG
CCAATGAGAACACGGTTACAACGACATCCCTGAATGGAAATGGCAACGGC
AATGGCAATAGCAATAGCAACAACAACAACAACATCGGATCGCCCGTCTC
CTCATCGACAACAAACAGCAGTAATGGCGGCAACGAGCGCGGCTCCTCCA
CAAAGTCCAATAGCAGCAGTGGAAGTGGCAGCTCGGGAAACTCGGCCAGC
AGCACGGGAAGTGGCGAGCTCAAATGCAATACGCCCATGACGCCATCTGA
GCTGGTGAAGAAGTTCCGCAACTACCTAACCGATCTTGAGTTCGAAGAGC
TCAAGGTGTACAAGGCAGTGTGGTATTTTGGCCAGCACGCCAGCAAGAAC
TACAACAAACCCGCCCCCACAGCCAATACCACAAATCTGGGCTATGACGA
TGATAATGGCAACTACAAGATCATCGAACACGATCACATAGCTTTTCGTT
ACGAGATTCTGGAGGTAATTGGCAAGGGCACCCCCCGGCCAGGTCATCAG
GGCGCTGGATCACAAGACCAACACACACGTGGCCATCAAGATCACTCCGG
AACAAGAAGCGCTTCCTCAACCAGGCCGTCGTCGAACTGAATATCCTCGA
TGAGCTGCGCGAAAAGGACGCGGATGGATCTCATAATGTCATACACATGC
TCGACTATACATATTTCCGCAAAGCATTTGTGTATTACTTTTGAGCTAAT
GAGCTTGAACCTGTACGAATTGATAAAGAAGAACAACTACAATGGATTCA
GCATGAGTCTCATACGACGCCTTCCCGCCACTTCGATTTGTTGAAGTGCC
TGCCGATTTGCTCTAATAAGGAAAAACATTTATTTCACTGTGATCTCAAG
CCCGGAAAAATTATTCTTTGCTTCAAACAGCGTGGCTAGCAGCTCCATTC
ACGGCTTACTCGAACCTCTCGCCAACCTCCATGCTA
FMO10262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk2-RF | 4663 | CG4551-RF | 835..1854 | 9..1049 | 4540 | 97 | Plus |
| Dyrk2-RE | 4590 | CG4551-RE | 762..1781 | 9..1049 | 4540 | 97 | Plus |
| Dyrk2-RD | 4417 | CG4551-RD | 589..1608 | 9..1049 | 4540 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14196927..14197299 | 399..27 | 1850 | 99.7 | Minus |
| 2L | 23513712 | 2L | 14195733..14196010 | 853..573 | 1150 | 96.4 | Minus |
| 2L | 23513712 | 2L | 14196075..14196248 | 572..399 | 855 | 99.4 | Minus |
| 2L | 23513712 | 2L | 14189167..14189235 | 920..852 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:25 has no hits.
FMO10262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:06 Download gff for
FMO10262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi35A-RA | 746..1783 | 1..1058 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:41 Download gff for
FMO10262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi35A-RD | 578..1615 | 1..1058 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:43:49 Download gff for
FMO10262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyrk2-RD | 578..1615 | 1..1058 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:43:49 Download gff for
FMO10262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14196927..14197293 | 33..399 | 100 | <- | Minus |
| 2L | 14195733..14196010 | 573..853 | 96 | <- | Minus |
| 2L | 14196075..14196247 | 400..572 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:41 Download gff for
FMO10262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14195733..14196010 | 573..853 | 96 | <- | Minus |
| arm_2L | 14196075..14196247 | 400..572 | 99 | <- | Minus |
| arm_2L | 14196927..14197293 | 33..399 | 100 | <- | Minus |
