FMO10271.5prime Sequence
1058 bp (870 high quality bases) assembled on 2010-11-11
> FMO10271.5prime
CAGTCGACATGCGCCCGCAATCAGCTGCGTGTCTATTACTGGCCATCGTT
GGCTTCGTGGGAGCCACCGAGTGGTGGGAGAGTGGAAACTACTACCAGAT
CTACCCGCGCTCCTTCCGGGATTCCGACGGAGACGGCATTGGCGACCTGA
ACGGGGTCACTGAAAAGCTGCAGTACCTGAAAGACATCGGCTTCACGGGC
ACATGGCTGTCGCCCATATTCAAGTCGCCCATGGTCGACTTTGGTTACGA
CATATCGGACTTCTACCAGATCCATCCCGAATATGGAACCATGGAGGACT
TTGAGCGAATGATCGCCAAGGCCAAGGAGGTGGGCATTAAAATCATCCTG
GACTTCGTACCAAACCACTCAAGTACCGAAAACGTTTGGTTCACCAAGTC
TGTGGACAGTGACCCCGTCTACAAAGACTTCTACATCTGGCACGATGGCA
AGATCAACAACGAGACCGGTGAGCGGGAGCCGCCGAGCAACTGGAACTCT
GAGTTTCGCTACAGCGCCTGGGAGTGGAACGAGGTGCGTCAGCAGTACTA
CCTCCACCAGTTCGCCATCCAGCAGGCCGACCTCAACTATCGCAATCCGG
CCGTGGTTAACGAGATGAAGAACGTTACTCGCTTCTGTCTGGGAAAGGGA
GTATCCGGATTCCGTATAGATGCAGTTCCCTACTTGTTTGACGTGTATCT
CTATCGCTACAACCAGTATCCGGACGAGCCTCTGACCAACGACTCCGTGA
ACTGTCCCGACCCTGATGACCACTGCTACACGCAGCACATCTATACACAT
GACATGCCGGAAACAATTGACATGGTGTACCAGTGGCGTGAGTTGGTGGA
TGAGTTTCATGTGGAGAACGGCGGAGATAGAGCTGCTGATGACGGAGCGT
ACACCAGCTTTGACAACATCATGACTACTATGGAAATGGAGTCAGGATGG
CTCCCACATTCCCTCACTTTGACTTCCTTACGAGCATCACACGCCCTCTA
GCCGAAGTACGTAGAAACATATACGATTGATCGACGCCCATGCTCGTATG
GCGTTATG
FMO10271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A1-RA | 1826 | CG8696-RA | 21..1045 | 9..1022 | 4620 | 97.6 | Plus |
| Mal-A8-RA | 1814 | CG8690-RA | 146..652 | 92..598 | 500 | 74.2 | Plus |
| Mal-A6-RC | 1892 | CG30360-RC | 163..687 | 96..620 | 440 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8450897..8451884 | 989..9 | 4465 | 98 | Minus |
| 2R | 25286936 | 2R | 8472099..8472605 | 92..598 | 480 | 73 | Plus |
| 2R | 25286936 | 2R | 8465320..8465844 | 96..620 | 435 | 72.2 | Plus |
| 2R | 25286936 | 2R | 8458913..8459195 | 92..374 | 230 | 72.1 | Plus |
| 2R | 25286936 | 2R | 8471348..8471514 | 262..96 | 220 | 75.4 | Minus |
| 2R | 25286936 | 2R | 8471012..8471091 | 598..519 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:43 has no hits.
FMO10271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:10 Download gff for
FMO10271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpH-RA | 8..1021 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:57 Download gff for
FMO10271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A1-RA | 13..1026 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:04 Download gff for
FMO10271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A1-RA | 13..1026 | 1..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:04 Download gff for
FMO10271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8450879..8451890 | 1..1004 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:57 Download gff for
FMO10271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4338384..4339395 | 1..1004 | 97 | | Minus |
