FMO10272.5prime Sequence
1078 bp (875 high quality bases) assembled on 2010-11-11
> FMO10272.5prime
CAGTCGACATGGTGGTTTGCGGGAACATTTTGGCCAGGAACAACTTCGAG
CACTTTGTTCTGGCGTGTGCTCACCAAAATGACTGCTACGTGGAGATGGA
GTTCAAGCGGTGGCGAGAGTTCATCGTGCACGTCAAGGAGCACCTGGAAG
CAAATCCAAGCATGCAGCAAGAGCTCACTACTTCCGAAGTCATTTCGTCA
GCCAAATGCGAGGAGGAGGTCTCGCCAGCCAAGGTGTTCATAGTGGAGGA
GCCTCCGGAAAATTGCCTGGCTGAAGACATGTTCGTTGACGTGCCACCTT
CATCAGAGAACGACGAGAGCACCAGCCCGGTGGAGGAGGAGGAGGAAGAA
GACGACGAGGTGGACTCCTCCTCGATGACAGTTGACTGCGAATTGGGCAC
CAGAAACTCCACACACTTTGCTCCTTTAACCAAATTCAATCCTACGTTTT
ACCGACGCAGTCCTCGGATCACACAGTTCATTGAACTGTATAAGCAGCAG
ACATGCCTCTGGGATCCAGCGGATGAGTCGTACAGGGACAAGGAGAAACG
CGCAAATGCCTATGAGGAGTTGCTGGAGCAATTAAAGGCGACCGTCAATC
TTCACCTCACCGTCTATAAGCTGAAGAAGTGCATCACCAGCCTACACGCG
CAGTATGCGTCCATCTCATTATTATATTATAACTCAGAAACTAACCAAGG
TTCCACTGTACTACCATGGAAAGTACAGCTTTCTGGCATAGCGCGGTAGT
CTGGAGGATGCGGACATTTATGATGTCTACGGCGATGGCAAAATAAAGCT
GGTGTTCACAGAGGAGAATCAACTGACCACACAGTTCATTGATTTGTACT
CCAAGTTTCCCCAACTGTACGATCCCGCGCAAAATTTTTTACTATCTTTC
TAAACGTACGAAAGTCATCGCTCATAGAGATCACTGACCTGCTGACTTCG
GAGTTTTCGTTGGGCTGGTCACCCACTACGATGTCTACGACAGTATCAGA
AGCATGCTCCTAATGGATTATTTCGCGACGGATCAAATCCTCCACAGAAC
GTTCCAATGGTGGTGGGTTCCCTCGCTT
FMO10272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
az2-RA | 2006 | CG1605-RA | 54..1097 | 8..1059 | 4530 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7512270..7512696 | 434..8 | 2135 | 100 | Minus |
2R | 25286936 | 2R | 7511841..7512203 | 798..435 | 1500 | 94.8 | Minus |
2R | 25286936 | 2R | 7511588..7511786 | 996..797 | 740 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:46 has no hits.
FMO10272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:11 Download gff for
FMO10272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
az2-RA | 29..1072 | 8..1059 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:13:59 Download gff for
FMO10272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
az2-RA | 54..1097 | 8..1059 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:05 Download gff for
FMO10272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
az2-RA | 54..1097 | 8..1059 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:05 Download gff for
FMO10272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7511531..7511784 | 799..1059 | 91 | <- | Minus |
2R | 7511841..7512203 | 435..798 | 94 | <- | Minus |
2R | 7512270..7512696 | 8..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:13:59 Download gff for
FMO10272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3399346..3399708 | 435..798 | 94 | <- | Minus |
arm_2R | 3399036..3399289 | 799..1059 | 91 | <- | Minus |
arm_2R | 3399775..3400201 | 8..434 | 100 | | Minus |