FMO10275.5prime Sequence
980 bp (658 high quality bases) assembled on 2010-11-11
> FMO10275.5prime
CAGTCGACATGTGCCAGCATCATGGGCTGACATCACAGTCGTTGATGTCC
GGTGGCTCGCACATATCCCTGCTGGGCAGCAGCGGCAGCAGCGGTATGAG
CGGCAGCGGCGTCGGCAGCAGCGGTCAGAGTGTCCCGCAATGTCCCGCCG
CTGTGGCAGCCGCGGATGCCGCAATGATGGGCTCCAATGCCGGCGGCCAT
TGCCGCAGCCTGAGCGGCCTGAGCTCGATCAGCATACCGCCGCCGCCGCC
GGCGCTCTTCAATCCGTGCAGCTCGGCGCTGTCGCTGCAGCAGGCGGCGG
TAACCAGGTGGGGACCGCGCACCTCCTGCCCGGTCCACAGTCCGTTTCGT
GTGCGCGTGCCGAACGGCTCCATCTGCTCCGGACACCAGGCTCTGCTCCA
TAGCCACGATGTGGTGGCCCGGGATGTCTACGGGGAGGAGGCGCTCCGCG
TCACCCCGCCCCCGATGGTGCCCTACCTCAATGGCGACGAGCTGGACAAC
GTCGAGGGCGGCGAACTGCAGCATGTGACCCGGGTGCGACTGGTGCAGTT
TCAGAAGAACACGGACGAGCCCATGGGCATCACGCTGAAGATGACCGAGG
ACGGGCGGTGCATTGTGGCCAGGATTATGCACGGCGGGATGATTCATCGC
CAGGCCCCCCCCCCCACGTGGGCGACGAGATACACAAAGATCAACGGCCA
GCCGGTGCAGCATCAGTCGGTTGGACAATTGCAACGAATGCTGCGCGAGG
CACGCGGATCTGTCACACTCAAGATAGTTCCTACCTACCGCAACGCTCCG
CCCCCCTGCGAGCTTTTCAGGATCAGACCCGCTCCGGTGCTTATATTCGT
GCGCGCCCAATTCGATTATAATCCCCCTGCATCGATGAGCTTATACTCTT
GCAGCCCAGGCGGGCATATCGTTCCAGTGGGCGATATACTGCAGATTATT
AGCAGGACGATATCACTGGTGGCAGGCGCG
FMO10275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CASK-RG | 4071 | CG6703-RG | 1320..2288 | 8..980 | 4340 | 96.9 | Plus |
CASK-RD | 4017 | CG6703-RD | 1320..2288 | 8..980 | 4340 | 96.9 | Plus |
CASK-RA | 4112 | CG6703-RA | 1415..2383 | 8..980 | 4340 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21803683..21804065 | 390..8 | 1915 | 100 | Minus |
3R | 32079331 | 3R | 21791960..21792149 | 576..387 | 935 | 99.5 | Minus |
3R | 32079331 | 3R | 21791729..21791894 | 743..575 | 595 | 92.9 | Minus |
3R | 32079331 | 3R | 21791531..21791604 | 812..739 | 250 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:00:52 has no hits.
FMO10275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:12 Download gff for
FMO10275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caki-RD | 1312..2286 | 1..980 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:03 Download gff for
FMO10275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CASK-RA | 1409..2383 | 1..980 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:09 Download gff for
FMO10275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CASK-RA | 1409..2383 | 1..980 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:09 Download gff for
FMO10275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21789550..21789587 | 945..980 | 94 | <- | Minus |
3R | 21789662..21789760 | 843..944 | 92 | <- | Minus |
3R | 21790709..21790738 | 813..842 | 100 | <- | Minus |
3R | 21791531..21791599 | 744..812 | 90 | <- | Minus |
3R | 21791729..21791893 | 576..743 | 92 | <- | Minus |
3R | 21791961..21792146 | 390..575 | 99 | <- | Minus |
3R | 21803684..21804071 | 1..389 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:03 Download gff for
FMO10275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17615272..17615309 | 945..980 | 94 | <- | Minus |
arm_3R | 17615384..17615482 | 843..944 | 92 | <- | Minus |
arm_3R | 17616431..17616460 | 813..842 | 100 | <- | Minus |
arm_3R | 17617253..17617321 | 744..812 | 90 | <- | Minus |
arm_3R | 17617451..17617615 | 576..743 | 92 | <- | Minus |
arm_3R | 17617683..17617868 | 390..575 | 99 | <- | Minus |
arm_3R | 17629406..17629793 | 1..389 | 99 | | Minus |