Clone FMO10277 Report

Search the DGRC for FMO10277

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:102
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptLin29-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10277.5prime Sequence

944 bp (660 high quality bases) assembled on 2010-11-11

> FMO10277.5prime
CAGTCGACATGAAATTACGATGCTTTAACCAGGCCCAAACTTCGCACAGT
TGGCACCCCAGATCCGTGTTCAGGGTCGTAAGCAGTTGTCCTCCCGATCG
AAAAAAACGGCCAAGCCCAGCGAGCTGGCAAATCTGTATTGGCCATCTCC
TAACAAATTATCTTGGAATGTTTAAAATGGACTCCGCAGACTTCTGGCAG
CAAGCGCGTGCTCCGTTTGGTCTGCAAACTGCGCTTCACCAATACTCTTC
CCCCCCGAATCAACAGCCAATATCCCACCACGCCCTGCACCACTCCGTTC
CGCAGGAGAACGAGCAGTTGGCCGGAGTTCAACCAGAAGGTCCAGCAGCA
GGATCAGGCGTAGTGGGCAACAACAGTTCCATGGCAATTTCCGGCACCAA
TTCAACTGTGGGCAGCAAGGCGGAGTCCAGTCACATTCCGCAGCAGCAAC
AAAAGCAGCAGTCATATGGAAGCGACTCCTTCCGAGGACCGCACTCGCCC
CAGCTGAGTAGCCACCACCTGTTGTTTAACGCCGCTGCAGCCGCTGCTGC
GGCGGTCCACCTCAAGTCCACGGCGATGCAGAATAACCTCTCGCCAATAG
GCGATCCCCCCCCCAAATAATCTTCGCAACTACGGACAAGGATCCTTAAA
CGCCTTATGTGGCACCCCCCCCACAGCAGGAGATGGATGCCAACACGCCC
CTACAGCCGTTGGACGAGTGTCCCACTCTCTATTTCATGCGCATGCTTAG
TCCCAGTACGGCGGACACCCTATTACTTGGTTTGACCCACACGCTACAGA
AATCTCGGAAGGTCGAGCACTGATAATCGGACTCGGAGCACCCAGTACGG
TGTCCACCGACGATGCACAGTCAGTGCGCGTCTCATCAGCTGGCAGGGAC
AGACCGATCACTCGCAGACTCATCAGTGCAAGCCAATGTCCCCT

FMO10277.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Lin29-RA 3937 CG2052-RA 162..1097 9..944 3915 95 Plus
Lin29-RB 3907 CG2052-RB 162..1097 9..944 3915 95 Plus
Lin29-RC 5533 CG2052-RC 1758..2693 9..944 3915 95 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 390596..391531 944..9 3715 95 Minus
Blast to na_te.dros performed 2014-11-26 17:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6853 328..461 113 59.7 Plus

FMO10277.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:13 Download gff for FMO10277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2052-RB 135..1077 1..944 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:07 Download gff for FMO10277.5prime
Subject Subject Range Query Range Percent Splice Strand
Lin29-RC 1468..2410 1..944 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:14 Download gff for FMO10277.5prime
Subject Subject Range Query Range Percent Splice Strand
Lin29-RC 1751..2693 1..944 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:14 Download gff for FMO10277.5prime
Subject Subject Range Query Range Percent Splice Strand
4 390596..391536 1..944 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:07 Download gff for FMO10277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 411222..412162 1..944 94   Minus