FMO10277.5prime Sequence
944 bp (660 high quality bases) assembled on 2010-11-11
> FMO10277.5prime
CAGTCGACATGAAATTACGATGCTTTAACCAGGCCCAAACTTCGCACAGT
TGGCACCCCAGATCCGTGTTCAGGGTCGTAAGCAGTTGTCCTCCCGATCG
AAAAAAACGGCCAAGCCCAGCGAGCTGGCAAATCTGTATTGGCCATCTCC
TAACAAATTATCTTGGAATGTTTAAAATGGACTCCGCAGACTTCTGGCAG
CAAGCGCGTGCTCCGTTTGGTCTGCAAACTGCGCTTCACCAATACTCTTC
CCCCCCGAATCAACAGCCAATATCCCACCACGCCCTGCACCACTCCGTTC
CGCAGGAGAACGAGCAGTTGGCCGGAGTTCAACCAGAAGGTCCAGCAGCA
GGATCAGGCGTAGTGGGCAACAACAGTTCCATGGCAATTTCCGGCACCAA
TTCAACTGTGGGCAGCAAGGCGGAGTCCAGTCACATTCCGCAGCAGCAAC
AAAAGCAGCAGTCATATGGAAGCGACTCCTTCCGAGGACCGCACTCGCCC
CAGCTGAGTAGCCACCACCTGTTGTTTAACGCCGCTGCAGCCGCTGCTGC
GGCGGTCCACCTCAAGTCCACGGCGATGCAGAATAACCTCTCGCCAATAG
GCGATCCCCCCCCCAAATAATCTTCGCAACTACGGACAAGGATCCTTAAA
CGCCTTATGTGGCACCCCCCCCACAGCAGGAGATGGATGCCAACACGCCC
CTACAGCCGTTGGACGAGTGTCCCACTCTCTATTTCATGCGCATGCTTAG
TCCCAGTACGGCGGACACCCTATTACTTGGTTTGACCCACACGCTACAGA
AATCTCGGAAGGTCGAGCACTGATAATCGGACTCGGAGCACCCAGTACGG
TGTCCACCGACGATGCACAGTCAGTGCGCGTCTCATCAGCTGGCAGGGAC
AGACCGATCACTCGCAGACTCATCAGTGCAAGCCAATGTCCCCT
FMO10277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lin29-RA | 3937 | CG2052-RA | 162..1097 | 9..944 | 3915 | 95 | Plus |
Lin29-RB | 3907 | CG2052-RB | 162..1097 | 9..944 | 3915 | 95 | Plus |
Lin29-RC | 5533 | CG2052-RC | 1758..2693 | 9..944 | 3915 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 390596..391531 | 944..9 | 3715 | 95 | Minus |
Blast to na_te.dros performed 2014-11-26 17:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6853 | 328..461 | 113 | 59.7 | Plus |
FMO10277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:13 Download gff for
FMO10277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2052-RB | 135..1077 | 1..944 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:07 Download gff for
FMO10277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lin29-RC | 1468..2410 | 1..944 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:14 Download gff for
FMO10277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lin29-RC | 1751..2693 | 1..944 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:14 Download gff for
FMO10277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 390596..391536 | 1..944 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:07 Download gff for
FMO10277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 411222..412162 | 1..944 | 94 | | Minus |