FMO10279.5prime Sequence
984 bp (659 high quality bases) assembled on 2010-11-11
> FMO10279.5prime
CAGTCGACATGGTACGAAAAAAACGAGAAATCGTAATAAAGGAAAATATT
CAAGGACGAAGTTACCTTAAAAAAATATGTTGTTCGTATATAATACTGTC
CATCCTCGTAATTTCTAATGCCTTGCCCCCAGTAATACGAGTAGGTGCCA
TATTTACGGAAGATGAACGCGAAAGCAGTATTGAATCTGCATTTAAATAC
GCAATATACCGTATAAATAAGGAAAAGACTCTTCTTCCCAATACACAATT
GGTTTACGATATTGAGTATGTTCCCCGAGATGACTCGTTTCGCACTACTA
AAAAGGTTTGCAGTCAGTTGGAAGCAGGTGTTCAAGCAATTTTTGGCCCA
ACAGATGCTCTTTTAGCTAGTCATGTACAATCCATATGCGAAGCATATGA
TATACCCCATATTGAAGGTCGAATTGACCTCGAATATAATTCTAAAGAAT
CCCCTATAAATTTATATCCGTCGCATACGCTCTTAACTCTACCATATACA
GATATAATGGTATATTTGAACTGGACGAAGGTGGCAATAATCCATGACCA
AGATTATGGTCTATTTAATTTGATGCACTCATCAACTGAGACGAAAGCGG
AAACGCATACCATGTAAGCAAGTCCGGATTCCTATCGCCAAGTTTTACGA
GCGATACGCCCCCCCCAACCTTACAAAATAATAGTGGATACCAATCCGTC
CCATATAAATCGTTTTTTAGATCCATTTTGCAACTACAAATGAATGACCA
TCGTTACCAGTACCTCTCCACAATATTCTACTTGGAGACATATGATCTGG
AAGATTTCAGATATAACAGCGTAAATATAACTGCATTTCGGCTGGTAGAT
GTCGATAGCAAAGATATCTCGAAGTAACTCCACCACATACAGAAATAAAA
CACCATCGCATTGGACACTATAAATGGAAAGTCCTTATATACAGACGGAG
TCCGCATTAATGTTTGATTCGTGTACGCGTTTGC
FMO10279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11155-RD | 4984 | CG11155-RD | 149..1125 | 9..984 | 4110 | 95.1 | Plus |
| CG11155-RB | 3644 | CG11155-RB | 149..1125 | 9..984 | 4110 | 95.1 | Plus |
| CG11155-RA | 2979 | CG11155-RA | 149..1125 | 9..984 | 4110 | 95.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1127000..1127417 | 143..560 | 1955 | 97.8 | Plus |
| 4 | 1348131 | 4 | 1126808..1126943 | 11..146 | 680 | 100 | Plus |
| 4 | 1348131 | 4 | 1128488..1128655 | 558..724 | 550 | 89.9 | Plus |
| 4 | 1348131 | 4 | 1129567..1129730 | 780..944 | 485 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:01:02 has no hits.
FMO10279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:13 Download gff for
FMO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RC | 144..1120 | 9..984 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:09 Download gff for
FMO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 149..1125 | 9..984 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:16 Download gff for
FMO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 149..1125 | 9..984 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:16 Download gff for
FMO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1129566..1129730 | 779..944 | 91 | -> | Plus |
| 4 | 1130025..1130065 | 945..984 | 97 | | Plus |
| 4 | 1127002..1127415 | 145..558 | 97 | -> | Plus |
| 4 | 1128489..1128655 | 559..724 | 89 | -> | Plus |
| 4 | 1129435..1129488 | 725..778 | 87 | -> | Plus |
| 4 | 1126802..1126941 | 4..144 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:09 Download gff for
FMO10279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1147428..1147567 | 4..144 | 97 | -> | Plus |
| arm_4 | 1147628..1148041 | 145..558 | 97 | -> | Plus |
| arm_4 | 1149115..1149281 | 559..724 | 89 | -> | Plus |
| arm_4 | 1150061..1150114 | 725..778 | 87 | -> | Plus |
| arm_4 | 1150192..1150356 | 779..944 | 91 | -> | Plus |
| arm_4 | 1150651..1150691 | 945..984 | 97 | | Plus |
