FMO10280.5prime Sequence
900 bp (658 high quality bases) assembled on 2010-11-11
> FMO10280.5prime
CAGTCGACATGGTGTTCCAAATAATAATCCTGGTGATCTGCACCATCTGC
ATGAAGCACTACGCCAAAGGGGAGTTTCAACAAAGTCTGGCCATAACCGA
CATCCTGCCCGAGGACATCAAGCGTTACGACAAGATGAGACCGCCGAAGA
AAGAGGGTCAGCCGACGATAGTCTACTTCCATGTGACGGTGATGGGTCTG
GACTCCATTGATGAAAACTCGATGACTTATGTGGCGGATGTGTTCTTTGC
ACAGACGTGGAAGGATCATCGCCTGCGATTGCCGGAGAATATGACACAGG
AATACCGCCTGCTCGAGGTGGACTGGCTAAAAAATATGTGGCGGCCGGAT
TCGTTTTTCAAAAACGCCAAATCGGTGACCTTTCAGACCATGACAATACC
CAATCACTATATGTGGCTGTACAAGGATAAGACCATTCTGTACATGGTCA
AAATAACACTGAAGCTGTCCTGCATCATGAACTTCCCCATTTATCCTCAT
GATACACAGGAGTGCAAGCTGCAAATGGAAAGCCTGTCCCACACCACGGA
TGACTTGATATTCCAGTGGGATCCAACAACGCCCCTTGTGGTTGATGAAA
ACATCCCACCTGCACTATTGTGGCCCTCATCCGAAATGAAACGGCGGACT
GTACCCAAGTTTATCCCCCCCCCCAACTTCACATGTCTGGACGTGGTGTT
CACCCTTAAGCGTCGTTTGGTTTACTACGTTTTCAACACCTACATTCCCA
CCTGCATGATAGTGATCACGCCCCGAGTATCCTTCTGGATCACACCGCGC
GCGCGCCACCAGCCCGTGTGACTCTGGGTGTCACCTCCTTGCTAACGCTT
TCCACGCAACACGCCAAATCGCAGTCGTCTCCGCCACCCCGCTCAATATA
FMO10280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ort-RA | 2158 | CG7411-RA | 349..1223 | 9..888 | 3885 | 96.5 | Plus |
| HisCl1-RD | 1693 | CG14723-RD | 548..811 | 159..422 | 270 | 74 | Plus |
| HisCl1-RC | 1707 | CG14723-RC | 430..693 | 159..422 | 270 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19661721..19662175 | 80..534 | 2230 | 99.3 | Plus |
| 3R | 32079331 | 3R | 19662286..19662634 | 535..888 | 1185 | 91 | Plus |
| 3R | 32079331 | 3R | 19661592..19661662 | 9..79 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 11788021..11788219 | 224..422 | 185 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:01:06 has no hits.
FMO10280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:14 Download gff for
FMO10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 342..1223 | 1..888 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:10 Download gff for
FMO10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 342..1223 | 1..888 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:17 Download gff for
FMO10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 342..1223 | 1..888 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:17 Download gff for
FMO10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19661585..19661662 | 1..79 | 94 | -> | Plus |
| 3R | 19661721..19662175 | 80..534 | 99 | -> | Plus |
| 3R | 19662286..19662634 | 535..888 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:10 Download gff for
FMO10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15487307..15487384 | 1..79 | 94 | -> | Plus |
| arm_3R | 15487443..15487897 | 80..534 | 99 | -> | Plus |
| arm_3R | 15488008..15488356 | 535..888 | 92 | | Plus |
