FMO10281.5prime Sequence
998 bp (689 high quality bases) assembled on 2010-11-11
> FMO10281.5prime
CAGTCGACATGTCTACGGAGGAGCATGTGTGGCGAGCGCACGTCGTGCGG
CGCTTACGCGAGCGAAATCGCAAGGAGTGCGACAACTTCAAGGAGATCAT
CGAGCAAAACAACCGACTGATTGACCATGTGGCGCAACTGAAGGCGGACA
ACCTGAAGATCTCCGTCGAAAACGAGCAGCTCCGCAACGCGGTGTCAACA
GGTGGCACCGGCTCCAACGTGGCTATCGCCACCCTCGAAAAGAAGCTGCT
CAGCCAGCAGGAGGAGCTCACAGAGCTACACAAGCGCAAGGGCGAGAACT
CCCAGATGATCGTGGACCTCAACCAGAAGGTCGAGCAGCAGAGGATCATA
ATTTCCGAGAAGGAGCACAGCCTCGTCATTTTTTTAAACGAACAACAACC
GATTGCGCGCGGAGGTGCAGCTACTTCACTCGAGTTTGGAGGAACTCAAG
AAGCTGAACAACCAACTGCTGGACGAACATACGGCGCTTCAATTGGCATT
TAGCTCCCTCGAGGAGAAGTTAAGGGGAGTGCAAGATGAAAATCGGCGTC
TACTGGAGCGACTTATGCAATACAAGTCAAAGGATGCCGACAAGTTGAAC
GAGGAAAACGAGAGCATAATTACGAAACGTTCGGCTAAACTGAAACGTGA
CCTAGAAGACGCGGTTCGTGAGCCCAGTTCCCCCCCCTATCTTTTTTTTC
TTCGCCCGGCGCCGCATCCTTGCAGCGCAACTCCAGTCTCGCTCAGTTTC
GTTGGCGGTCTCATCGGCGACGAGGATTTCGACGACCGCTGCCTATTAAT
TGGTTTTCATGGTAGGCCATAGGTCTCGATGATAATGAATATATTAGCGC
TCGTTTTACAGCAGCGAAATCGCCGAGAACTCGCGGGCTTCCATCGACAC
CTGAAGGCCACGCGCCACCTTGTGTCTATGTCTATTCCCACCAGATCCTC
ATGAAGTTCGAGTCCCACGAGAACGAGTCGCACGCGTGCGCTGGAGTC
FMO10281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg16-RC | 2350 | CG31033-RC | 255..1238 | 7..998 | 3965 | 94.4 | Plus |
| Atg16-RF | 2374 | CG31033-RF | 255..1262 | 7..998 | 3720 | 92.3 | Plus |
| Atg16-RB | 1668 | CG31033-RB | 100..556 | 535..998 | 1500 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29834361..29834622 | 370..109 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 29831981..29832348 | 998..624 | 795 | 86.2 | Minus |
| 3R | 32079331 | 3R | 29833932..29834081 | 535..386 | 705 | 98 | Minus |
| 3R | 32079331 | 3R | 29834746..29834847 | 108..7 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 29833194..29833281 | 622..535 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:01:09 has no hits.
FMO10281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:15 Download gff for
FMO10281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31033-RD | 255..1238 | 7..998 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:13 Download gff for
FMO10281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg16-RC | 255..1238 | 7..998 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:19 Download gff for
FMO10281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg16-RC | 255..1238 | 7..998 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:19 Download gff for
FMO10281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29833193..29833281 | 535..623 | 98 | <- | Minus |
| 3R | 29833933..29834095 | 371..534 | 93 | <- | Minus |
| 3R | 29834361..29834622 | 109..370 | 100 | <- | Minus |
| 3R | 29834746..29834847 | 7..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:13 Download gff for
FMO10281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25658915..25659003 | 535..623 | 98 | <- | Minus |
| arm_3R | 25659655..25659817 | 371..534 | 93 | <- | Minus |
| arm_3R | 25660083..25660344 | 109..370 | 100 | <- | Minus |
| arm_3R | 25660468..25660569 | 7..108 | 100 | | Minus |
