FMO10286.5prime Sequence
1081 bp (940 high quality bases) assembled on 2010-11-11
> FMO10286.5prime
CAGTCGACATGGGTGCAACCAAGAACCTGGACTTGATAGGCACCATCGAA
GACGATGCCGAGGTGGAGAACTTGTCGGAGGACTCCGATGCGGAGGTCGA
GTACCAACCCACAAAACTGAGACACAAGAAGGTGACGGAGTTTGAGAAGG
GCTTCGAGTTCGTGTCCTCAGTGAAGGAGTACAACCAGGACACTTGGGAC
GACCTGATGAAGTACGTGAAGCGAAAGGCGCGCACAAAGACCGACGACAA
GATCGCCGCCCGGCTGCAAAAGCGGGGTGGCGCCGAAGCTGTGGCCGCGG
AGCAGAGCGATGGAAGTGAGATAGATCTCTCCGAGGACGAATTGAAGCAT
GACAACCTGCGGCTAAGGGAGAAGAAGGAATCCAAAAAAAAGAAGAAGAA
GGCTGGAGAGGAGGATGAAGAGGACGAGGGCGAGAAGATGCAGTTCGCCG
ACACTGTAGAGGCGAACGAGCAGATCACTTCCTTCTACCAAATGAACCTT
TCACGTCCCCTGATGCGTGCCATCGGTGTGCTGGGGTACATATATCCTAC
GCCGATCCAGGCCTCTACGATTCCTGTGGCTTTGCTAGGTCGCGATATCT
GCGGCTGTGCTGCCACGGGAACGGGCAAATCTGCTGCTTATATGTTGCCT
ACTCTAGAACGTTTGCTGTATCGTCCTCTTAACAACAAGGCCATCACCAG
GGTACTGGTTCTTGTGCCCACTCGTGAGCTGGGCGCCCAGGTTTACCACG
TGACAAAGCAATTGTGCCAGTTCACCACTATTGATGTGGGTCTGGCAATT
GGTGGTCTGGATGTGAAGGCTCACGAGGCAGTACTTCGCCAGATCCCGAC
ATTGTCATTGCAACGCCAGGTCGTCTAATCGATCACATTAAAAATACGCC
CAGTTTTACATTGCATTCCATTCAAGGTTCTCATTCTGGACGAGGCCGAT
CGTATGCTGACGAGTACTTCGCCGAACAGATGAAGAGATCATCAACTCTG
CTGTAAGACCGTCAGACATGTTGTTCTCCGTCCACATGAGCGAGCAAGTC
AAGATCTGCTGCGTATCGCTGGACAAGCCAT
FMO10286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rs1-RB | 2670 | CG2173-RB | 220..1298 | 9..1079 | 5000 | 98.2 | Plus |
| Rs1-RA | 2527 | CG2173-RA | 77..1155 | 9..1079 | 5000 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8165105..8165928 | 100..922 | 4010 | 99.4 | Plus |
| 2R | 25286936 | 2R | 8164956..8165048 | 9..101 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 8166114..8166276 | 925..1079 | 345 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:01:23 has no hits.
FMO10286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:17 Download gff for
FMO10286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rs1-RA | 72..1153 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:22 Download gff for
FMO10286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rs1-RA | 77..1158 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:24 Download gff for
FMO10286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rs1-RA | 77..1158 | 9..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:24 Download gff for
FMO10286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8164956..8165048 | 9..101 | 100 | -> | Plus |
| 2R | 8165107..8165931 | 102..926 | 99 | -> | Plus |
| 2R | 8166116..8166279 | 927..1081 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:22 Download gff for
FMO10286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4052461..4052553 | 9..101 | 100 | -> | Plus |
| arm_2R | 4052612..4053436 | 102..926 | 99 | -> | Plus |
| arm_2R | 4053621..4053784 | 927..1081 | 92 | | Plus |
