FMO10287.5prime Sequence
1040 bp (684 high quality bases) assembled on 2010-11-11
> FMO10287.5prime
CAGTCGACATGGCCCAGTTTGTGACCCACATCCAGCCAACGCTGATGGAG
GCGTCCCAAGGTCATGTTCCTCACCACCACGGACATCAGGTGGGTGTGCA
GCACTCGTCGCATCTGCCCCACAGCGGCCACAACATGCCCTCGCCGCCAA
CCCACAATCACCATCATGCCCACGGACATGGTCATCATACCAGCAGCGGT
GGTCATCATGGAGGAGCAGGTGGCCATTCACAGAAGCAGGCAGCGCATCA
TAGCACCACCTCCGGCCACGCCGCCAAGGGACAGCACCACAGCCCACCGT
CGAGGATCCATTCACCGCCAACGGAACACCATCCGGATCATGTCGGTCAC
TACGAGTACTTCCAGCATCAGCACGAGCAGATCTTCCACCATGAAGGAGC
AAACGGTGGTGCCAGCCACAAGCAACAGACCCACCACCTTTCCAACAAGC
ACGAGCACTGCCCCACAGGACACCAGAGTGCGGGCGATGGAAACACTTCC
TTCCTGCCTGCCGCTCGCGCCGGAAATCTGGAGCGAGTGCTCGAGCATTT
GAAGAACAACAATGACATTAACACCAGCAATGCGAATGGCTTGAATGCCC
TGCACCTGGCCTCCAAGGATGGCCACCCCTCACGTCGTCTCGGAACTCCT
TCGTAGGGGCGCGATTGTGGATAGTGCCACCAAAAACCCCAACACTGCCC
TCCACATCGCCTCATTGGCTGGACAGGAGGAGGTGGTGAAGCTACTGCTG
GAGCACAATGCCTCCGTAAATGTGCATCCCAGAATGGATTCACTCTACTC
TACATGGCCACCCCAGCAGAACCACGATGCTGTGGTGCGTCTCCTTTTGT
CCAACGGAGCCAACCAGAGTCTGGCCACCGAGGATGGCTTCACCCCACTG
GCCGTCGCCCATGCCACTCAGCATCTTGACTTAGTCGTTGCACGTCCCTC
CCTCGAGAGTGATACTCGTGCAAAGGTCAGGCTTCCCTGGCGCTGCACAT
TGCCGCCAAAAGGACGACGTCAAGGCAGCCAACTCTGCCT
FMO10287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank2-RE | 2780 | CG42734-RE | 556..1576 | 9..1038 | 4460 | 96.3 | Plus |
| Ank2-RK | 14309 | CG42734-RK | 556..1576 | 9..1038 | 4460 | 96.3 | Plus |
| Ank2-RR | 15005 | CG42734-RR | 556..1576 | 9..1038 | 4460 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7717366..7717840 | 483..9 | 2345 | 99.6 | Minus |
| 3L | 28110227 | 3L | 7710365..7710802 | 1029..584 | 1405 | 91.7 | Minus |
| 3L | 28110227 | 3L | 7710868..7710970 | 584..482 | 485 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:01:26 has no hits.
FMO10287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:18 Download gff for
FMO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RK | 493..1521 | 1..1040 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:24 Download gff for
FMO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RR | 549..1577 | 1..1040 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:26 Download gff for
FMO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RR | 549..1577 | 1..1040 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:26 Download gff for
FMO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7710355..7710801 | 585..1040 | 92 | <- | Minus |
| 3L | 7710868..7710969 | 483..584 | 98 | <- | Minus |
| 3L | 7717367..7717847 | 1..482 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:24 Download gff for
FMO10287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7703455..7703901 | 585..1040 | 92 | <- | Minus |
| arm_3L | 7703968..7704069 | 483..584 | 98 | <- | Minus |
| arm_3L | 7710467..7710947 | 1..482 | 98 | | Minus |
