FMO10288.5prime Sequence
1079 bp (761 high quality bases) assembled on 2010-11-11
> FMO10288.5prime
CAGTCGACATGATGCTGAATAAACACGAGGGATACCAACGCACAAGCCAA
ATGTTTCCCCACCAGCAGCACCAGCTGCCTCAGCTGCACCAGCAGCCTTA
TCTGCAACAGTCTCTGTGCCAAAACTTCCAGCAATTGCAGTACGAAACGG
GAGTAGGTGCTTCGGCGTCAGGGTCCGCCGAGGCTACGGCAGACCTGCTC
AAGGCGGAGCGGGAGTCTATCCACTCCGGCCAGTTTATGGTCTCGCACTT
CGAGGCAGAGGAGGCGCAGGACGACCTAGAGGATGACGGCGAGGTGAAGA
TGCTAGACCCTGAGGACCCCGGTCTGGGCAAGCCGGGCGAGCCAACCAAC
ACATGTCGTGACGTGCAGCTTTACGTACCCCAAACAGTGGCCCACTTCAG
CGCCATGGACCAGGAGGGCGACGAGAGCAGCATGAGCATGGTGACCTCCC
ACCTGGAGATAGAGACCTCGCTCACCAAACTCTTCAAGTGCATGAATCTG
GCCTACAGTCAAAAACTAACCTCACCCAAATGGAATCATTTCAAAGGAGT
ACGACTTCGGTGGAAGGACAAAATTCGCCTGAACAATGTCATCTGGCGTT
GCTGGCACATGCAGTTCATACAAAAGCGCAGAACCCCGGTGTGTCAATTT
GCGTCGCCCCTGCCCGTTGATATACATAGTAATCCTCAAACTGTTGTTCT
TGAAGGCCAATACTCCCAACCCGCACTCAGCTGTTATAAAAGCCGAATAC
AGGAAATGGCGCAGCATCTATATGTCGAACGCTACGGGCTGCTTAACATA
TGATTCGAAAAGCGAATTAGACTTTTTGGAATGGTCGCCTCTGAACGATA
GGAACTTAATGCCAGACGATCGCCACCACCTACACCTTATTCTCGGCTAT
CAACGTTCCATTCCCATTTCCAGATTCTAGGGAAATCGCACGCGGCGCGG
GCATCGCGGACTTTATACAGCCCAGTCCTTGCTCCCCTTGCCACCCGAAG
TTAGAATGACATCGACATTAGCTTTCGACTGCACTCCACCCACCCGCTTG
CCCTCAGTTCCGGAGAGGACGACGCTGAA
FMO10288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-RM | 4068 | CG18362-RM | 495..1565 | 9..1079 | 4675 | 96.3 | Plus |
| Mio-RL | 3832 | CG18362-RL | 259..1329 | 9..1079 | 4675 | 96.3 | Plus |
| Mio-RK | 3830 | CG18362-RK | 257..1327 | 9..1079 | 4675 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21308288..21308787 | 508..9 | 2500 | 100 | Minus |
| 2L | 23513712 | 2L | 21304825..21304936 | 615..504 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 21289615..21289745 | 938..807 | 535 | 95.5 | Minus |
| 2L | 23513712 | 2L | 21297695..21297811 | 807..690 | 405 | 91.5 | Minus |
| 2L | 23513712 | 2L | 21301454..21301527 | 689..616 | 325 | 95.9 | Minus |
| 2L | 23513712 | 2L | 21289510..21289549 | 977..938 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2386 | 60..139 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2495..2536 | 56..97 | 111 | 73.8 | Plus |
FMO10288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:14:18 Download gff for
FMO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RC | 191..1217 | 1..1030 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:14:26 Download gff for
FMO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RK | 248..1274 | 1..1030 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:29 Download gff for
FMO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RK | 248..1274 | 1..1030 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:44:29 Download gff for
FMO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21289615..21289744 | 808..938 | 95 | <- | Minus |
| 2L | 21297695..21297811 | 690..807 | 91 | <- | Minus |
| 2L | 21301454..21301527 | 616..689 | 95 | <- | Minus |
| 2L | 21304825..21304931 | 509..615 | 100 | <- | Minus |
| 2L | 21308288..21308796 | 1..508 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:14:26 Download gff for
FMO10288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21289615..21289744 | 808..938 | 95 | <- | Minus |
| arm_2L | 21297695..21297811 | 690..807 | 91 | <- | Minus |
| arm_2L | 21301454..21301527 | 616..689 | 95 | <- | Minus |
| arm_2L | 21304825..21304931 | 509..615 | 100 | <- | Minus |
| arm_2L | 21308288..21308796 | 1..508 | 99 | | Minus |
