FMO10308.5prime Sequence
814 bp (814 high quality bases) assembled on 2010-11-12
> FMO10308.5prime
CAGTCGACATGGATTTCAACAAGCGACAGAACATGGAGGAGGTGGTGCGC
ATCGGAGGCAAAGGATCTATGCGCCGCAAGCATAAGAGAATCCCATCAGT
AGCTGCGGTCGATGAGAAGCGCGTGCAGGCGACATTGGCCAAGATACCGT
TAAAGAATATCAGCGGAATCCATGAGTTGACCATCGAGTTCACCGATTCC
AGTGAGGTTGTGGTAGTCATGCCCAAGGTTCAGGGCATCTCTGCCAATGG
TTTGTTAGTTGTTAATGGCGATTTCGTGCGCAAATCGTCAACAGCTGGCC
CATCGAAAATGGCCAAAGCAGCCAAGGCACCCAAGGCACCCAAGGCACCC
AAGGCACCCAAGACACCCATGGCACCCATGGCACCCATGGCACCCATGGC
ACCCATGACACCCAAGCCGGAAGCTTTTTCCGTCAAAAAGCCAGAATCAG
AGGAAACCATTAAGGTGGTGGCCAAGAAGCCCAAGAAGCTGCGCAATCGT
GTTCGTCCTCGCAACAAGAAGGTCCAAATGATGCTCTCTAAAAACAATGA
GGAAGCAGCCATGGCTGGCGGGGATTCGGAGCCGAAGCTTAGCAATGGTA
AATCAATTTTGATCTCCTCTGAAGATGGTAGCGATCCGGATAATGAGAAG
GTGCCATCGGATGAGTCTGATGTGGATCGGACCGTCGTCTGCGACAAAGA
TTCGCTGGGAAGTTTCGGCGATGATTCCGACGGCAAGGAGGACGATGACA
GTAAGAGTCGATTTACCTATCTTTCTACTCCGATGGCTATGATTCCGCAA
GCTTTCTAGACCAT
FMO10308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes4-RA | 1012 | CG18313-RA | 103..891 | 9..796 | 3920 | 99.9 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 419..848 | 367..798 | 1710 | 93.3 | Plus |
| betaNACtes6-RA | 967 | CG32598-RA | 419..848 | 367..798 | 1665 | 92.6 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 118..468 | 9..362 | 875 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14380507..14381295 | 9..796 | 3895 | 99.9 | Plus |
| X | 23542271 | X | 14379278..14379707 | 367..798 | 1660 | 93.3 | Plus |
| X | 23542271 | X | 14316249..14316678 | 798..367 | 1615 | 92.6 | Minus |
| X | 23542271 | X | 14171744..14172169 | 794..367 | 1505 | 91.1 | Minus |
| X | 23542271 | X | 14314760..14315019 | 798..540 | 1070 | 95 | Minus |
| X | 23542271 | X | 14172120..14172470 | 362..9 | 955 | 85.3 | Minus |
| X | 23542271 | X | 14316629..14316979 | 362..9 | 850 | 83.3 | Minus |
| X | 23542271 | X | 14378977..14379327 | 9..362 | 850 | 83.3 | Plus |
| X | 23542271 | X | 14315113..14315412 | 308..9 | 675 | 81.7 | Minus |
| X | 23542271 | X | 15576746..15576921 | 559..736 | 415 | 84.2 | Plus |
| X | 23542271 | X | 14315018..14315112 | 484..390 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:10:34 has no hits.
FMO10308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:04 Download gff for
FMO10308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18313-RA | 103..894 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:09 Download gff for
FMO10308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes4-RA | 103..896 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:12 Download gff for
FMO10308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes4-RA | 103..896 | 9..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:12 Download gff for
FMO10308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14380507..14381300 | 9..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:09 Download gff for
FMO10308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14274540..14275333 | 9..802 | 99 | | Plus |
