FMO10309.5prime Sequence
1111 bp (1007 high quality bases) assembled on 2010-11-12
> FMO10309.5prime
CAGTCGACATGACAAATATGAAGCAACGGCTGCGCAACTTGTTTCGCCGG
AACAAAATGCGCGCACGGCCCACTACAGTGGCCAGTGATGCGAATAAGGA
GCAGCCGGAGCCACCTAAGCAGGAGCCAAGCAAACAGAAGAAAACTAAGC
AGGATGCCTCCAAGCAGGAGCCACCTAAGCAGGAAGAGCCCGAAAAGCCA
CCCAAGGAAGTCGAAGTGGAGATAATACCCTCGCCAACGTCAGAGGGCGA
AATGCCCACCTACTTCCATGTGGGCGCCTTGGCGAAGGATTGCCTCATCA
ATGGCTTCAAGATCGGCGCATGGCAGATGCACTGCAGCACGCGAACCGAT
AATGACTTCTATCTGAACACCTTCGGCGAGGGCTATCCCACCATGAAGAA
CGTATTTGGCGGCATGGAGGTGTTCAAGGAAGTGGGCAACTACAGCACGT
CCCTCGGCTGGTTCACCAACAATGATCTTCTCTCGGAGATCGCTGTGCGC
GGCATGAACTTTGGCAGTCGATTGTATGGACTGCTCAAGTCAACAATTGG
CACAAAAGACGAAGTGAGCTTTCAAACGAAGCTGAAGTGCGGGTTGGAGC
GCGATCCCGTGAAGGTGGAACTGGTGGTGCCTCTGTACAACGAACCCCTA
TTTCTGGGCTATGTCCTGGTGGCGCCTGTAGAGAATTGGGTGCTGGGATA
TCGAACGGAGTACAACTTTGACGAAAAGGGATTCGATAAGCACGCCCTGT
GCCTGGGCTACAATAATGGGAGGACCGAAGTGGGTCTAAAACTCGAGAAT
TTCGAGGATCTTCGAGGCTCGATCTTCCAAAGGATCGGCGAAGCCTGGCC
TTTGCCATCAAGACGAATCTCTACAGTTCGGAAATGTGAAACAGTTTGCC
ATTGGGGTTCAGTACGACTTCCAGAATGCACCATGGTGAAGCCAAGCTGC
GGGAGACTCCAGAATGAGTTCGTCTACATCAAAGATGGGGAGAAACATCG
ATGTTGCTATCACTGCTTCGATGGAATAGAATCCCAATGGTGAGCCATAG
ATTGCCGTTTCTGGGGTTTCACTGGCAGCCTTCTAGACATCGTTGGCGCC
GTCAAGGTATG
FMO10309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17139-RA | 2398 | CG17139-RA | 1246..2327 | 9..1074 | 4880 | 97.8 | Plus |
| CG17140-RB | 1263 | CG17140-RB | 111..1192 | 9..1074 | 4880 | 97.8 | Plus |
| CG17140-RA | 2398 | CG17140-RA | 1246..2327 | 9..1074 | 4880 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10843739..10844292 | 562..9 | 2770 | 100 | Minus |
| 2L | 23513712 | 2L | 10843440..10843670 | 793..563 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 10843161..10843381 | 1006..794 | 665 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:10:37 has no hits.
FMO10309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:04 Download gff for
FMO10309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17140-RB | 106..1144 | 4..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:12 Download gff for
FMO10309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17140-RA | 1241..2279 | 4..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:15 Download gff for
FMO10309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17140-RA | 1241..2279 | 4..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:15 Download gff for
FMO10309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10843133..10843381 | 794..1030 | 93 | <- | Minus |
| 2L | 10843440..10843670 | 563..793 | 100 | <- | Minus |
| 2L | 10843739..10844297 | 4..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:12 Download gff for
FMO10309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10843133..10843381 | 794..1030 | 93 | <- | Minus |
| arm_2L | 10843440..10843670 | 563..793 | 100 | <- | Minus |
| arm_2L | 10843739..10844297 | 4..562 | 99 | | Minus |
