FMO10311.5prime Sequence
1132 bp (1026 high quality bases) assembled on 2010-11-12
> FMO10311.5prime
CAGTCGACATGTATCGCTGCAAAAATTGGTTTTGTGCGCGCAGCAACAAC
AACAACTACGTCGATGTGGCACTAAGCGAGGCACCACCCATCCATCCCAG
TGCAGCCACAACAACCACACCGAATAGCCGCAACTTTAGCGCCAGCAACA
ATAATAACGTGCGAAGCAACAGCAGCAAAAGTAATCAGCAAACAGCGGCA
CATAGAGGCGCTACCACCCATCCCACCCAAATCCCCCACACACACCACCC
AAGCACCACCCACTCGACCGATGAGGCTTCTCCGCCACAGGCCCACGTGG
TTACCTTTCTGGACGAATCCACAGCAGGCGGGAGCAACGGTGCCGTGACC
AGCAGCCGCCTGGTCACCACCGCCGAACTGCATCAGGCCCATATGCTGGA
GCACCACTCGAATCTGGACGCCATCGAGCAGGCGGACGACTTCATCTACG
GTCCTGGCGCAGGACTTTCGCTGTGCGACGACAGCCTGCCATCGGCCAAA
AACTGCTATCGACTGGTTATGCTCGGCTCATCACGCGCCGGCAAGTCATC
GATTGTGGCACGTTTCCTGGGCAATCGGTTCGAGGAGGCCTACACGCCGA
CCATCGAGGAGTTCCACCGCAAATTGTATCGCATACGGAATGAAGTCTTT
CAATTGGATATTTTGGATACTTCTGGCTATCATCCGTTTCCCGCAATGCG
ACGTTTATCATTTCTAACTGGGGATCTCTTCATCCTCGTCTTCAGCATGG
ATTCCCGCGAGTCCTTCGAGGAGGTGGTTCGCCTGCGGGAGAACATTCTG
GAGACCAAGTGGGCTGCACTAAATCCCGGCTCCCGGGTTTAAGAAGAAGA
GTCTTCCAAAGATACCCATGATATTGGCGGGAAATAAATGTGATCGAGAC
TTTAAAACTGTTCAGTTGACGAGGTGATGGGCTACATCGCTGGCCAGGAC
AACTGCTGCACCTTTGTGGAGTGCCTCGGCTCGTCAGATTACCGCATCGA
TGACCTATTCCACCCCGCTGTTTACGGTCTCCAATCTGCCGCTGGAAAGA
ACCCCAATCATCAATCGTCGATTGTTCTCCGTTTTTGGGGGCTTGGCAAT
TCAACAACACGGAATCTCGGCGGTGGGGCGGG
FMO10311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8641-RB | 3264 | CG8641-RB | 550..1638 | 1..1090 | 5185 | 98.7 | Plus |
CG8641-RA | 2288 | CG8641-RA | 550..1638 | 1..1090 | 5185 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7062357..7062882 | 526..1 | 2600 | 99.6 | Minus |
3L | 28110227 | 3L | 7061849..7062044 | 721..526 | 980 | 100 | Minus |
3L | 28110227 | 3L | 7060854..7061038 | 905..720 | 880 | 99.5 | Minus |
3L | 28110227 | 3L | 7060556..7060727 | 1090..918 | 565 | 94.9 | Minus |
Blast to na_te.dros performed 2014-11-26 17:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7004 | 40..338 | 181 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6864 | 102..225 | 166 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2395 | 109..200 | 145 | 66.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1046..1143 | 98..200 | 141 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2446 | 103..206 | 134 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2840 | 103..219 | 130 | 61.5 | Plus |
FMO10311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:59 Download gff for
FMO10311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8641-RA | 1..1081 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:50 Download gff for
FMO10311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8641-RA | 550..1638 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:55 Download gff for
FMO10311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8641-RA | 550..1638 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:55 Download gff for
FMO10311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7060556..7060740 | 906..1090 | 94 | <- | Minus |
3L | 7060854..7061037 | 721..905 | 99 | <- | Minus |
3L | 7061850..7062043 | 527..720 | 100 | <- | Minus |
3L | 7062357..7062882 | 1..526 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:50 Download gff for
FMO10311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7053656..7053840 | 906..1090 | 94 | <- | Minus |
arm_3L | 7053954..7054137 | 721..905 | 99 | <- | Minus |
arm_3L | 7054950..7055143 | 527..720 | 100 | <- | Minus |
arm_3L | 7055457..7055982 | 1..526 | 99 | | Minus |