Clone FMO10311 Report

Search the DGRC for FMO10311

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8641-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10311.5prime Sequence

1132 bp (1026 high quality bases) assembled on 2010-11-12

> FMO10311.5prime
CAGTCGACATGTATCGCTGCAAAAATTGGTTTTGTGCGCGCAGCAACAAC
AACAACTACGTCGATGTGGCACTAAGCGAGGCACCACCCATCCATCCCAG
TGCAGCCACAACAACCACACCGAATAGCCGCAACTTTAGCGCCAGCAACA
ATAATAACGTGCGAAGCAACAGCAGCAAAAGTAATCAGCAAACAGCGGCA
CATAGAGGCGCTACCACCCATCCCACCCAAATCCCCCACACACACCACCC
AAGCACCACCCACTCGACCGATGAGGCTTCTCCGCCACAGGCCCACGTGG
TTACCTTTCTGGACGAATCCACAGCAGGCGGGAGCAACGGTGCCGTGACC
AGCAGCCGCCTGGTCACCACCGCCGAACTGCATCAGGCCCATATGCTGGA
GCACCACTCGAATCTGGACGCCATCGAGCAGGCGGACGACTTCATCTACG
GTCCTGGCGCAGGACTTTCGCTGTGCGACGACAGCCTGCCATCGGCCAAA
AACTGCTATCGACTGGTTATGCTCGGCTCATCACGCGCCGGCAAGTCATC
GATTGTGGCACGTTTCCTGGGCAATCGGTTCGAGGAGGCCTACACGCCGA
CCATCGAGGAGTTCCACCGCAAATTGTATCGCATACGGAATGAAGTCTTT
CAATTGGATATTTTGGATACTTCTGGCTATCATCCGTTTCCCGCAATGCG
ACGTTTATCATTTCTAACTGGGGATCTCTTCATCCTCGTCTTCAGCATGG
ATTCCCGCGAGTCCTTCGAGGAGGTGGTTCGCCTGCGGGAGAACATTCTG
GAGACCAAGTGGGCTGCACTAAATCCCGGCTCCCGGGTTTAAGAAGAAGA
GTCTTCCAAAGATACCCATGATATTGGCGGGAAATAAATGTGATCGAGAC
TTTAAAACTGTTCAGTTGACGAGGTGATGGGCTACATCGCTGGCCAGGAC
AACTGCTGCACCTTTGTGGAGTGCCTCGGCTCGTCAGATTACCGCATCGA
TGACCTATTCCACCCCGCTGTTTACGGTCTCCAATCTGCCGCTGGAAAGA
ACCCCAATCATCAATCGTCGATTGTTCTCCGTTTTTGGGGGCTTGGCAAT
TCAACAACACGGAATCTCGGCGGTGGGGCGGG

FMO10311.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8641-RB 3264 CG8641-RB 550..1638 1..1090 5185 98.7 Plus
CG8641-RA 2288 CG8641-RA 550..1638 1..1090 5185 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7062357..7062882 526..1 2600 99.6 Minus
3L 28110227 3L 7061849..7062044 721..526 980 100 Minus
3L 28110227 3L 7060854..7061038 905..720 880 99.5 Minus
3L 28110227 3L 7060556..7060727 1090..918 565 94.9 Minus
Blast to na_te.dros performed 2014-11-26 17:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7004 40..338 181 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6864 102..225 166 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2395 109..200 145 66.3 Plus
roo 9092 roo DM_ROO 9092bp 1046..1143 98..200 141 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2446 103..206 134 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2729..2840 103..219 130 61.5 Plus

FMO10311.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:59 Download gff for FMO10311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8641-RA 1..1081 9..1090 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:50 Download gff for FMO10311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8641-RA 550..1638 1..1090 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:55 Download gff for FMO10311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8641-RA 550..1638 1..1090 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:55 Download gff for FMO10311.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7060556..7060740 906..1090 94 <- Minus
3L 7060854..7061037 721..905 99 <- Minus
3L 7061850..7062043 527..720 100 <- Minus
3L 7062357..7062882 1..526 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:50 Download gff for FMO10311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7053656..7053840 906..1090 94 <- Minus
arm_3L 7053954..7054137 721..905 99 <- Minus
arm_3L 7054950..7055143 527..720 100 <- Minus
arm_3L 7055457..7055982 1..526 99   Minus