Clone FMO10312 Report

Search the DGRC for FMO10312

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6431-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10312.5prime Sequence

1084 bp (1068 high quality bases) assembled on 2010-11-12

> FMO10312.5prime
CAGTCGACATGAAACAAATCGTCGTGCTTTGCATATTCTCACTCTTTGCC
AAAGATGCACAAACATTGCTCCTAAGCCAAATGGATTGGAAGAATCTGCG
CAACAGTGGAGCCTTGGACCTAAATGTCTTGCGCTGCTTTTTGCGCGACA
AAAACTATTGTCCCAGTCCACATATCGATCACCGTCTGTATGCACCCAAT
GGACCGCGTCGTGGAACTCCTTTAAATGTTAAGAACCCAATAACGCTTTA
TAAAGGTGGATTTAGCAAGCACCGCGAGACTGTCTTCATAATACACGGAT
TCAATGGAACTGCCATAGATATTCACCTGCAATTCCTTCGAGATGCTTAC
CTATCCCGCGATTTCAATGTCATTACAGTGGACTGGCGACCTTTGACCCG
CTATCCATGCTACCTCCACTCGCTTATAAACACCAGGTTAACTGCGCAAT
GCACCGCCCAGATCTACGCCTTCCTCACCCACTACGGAGCTGTCCGGGAA
CGGATCACTTGCGTGGGTCACTCCCTGGGCGCCCACATCTGCGGCATGAT
CAGCAACCACCTGACGCGGAAACAGTATCGCATCATTGGATTGGATCCCG
CCCGGCCTTTAATTGAGCGCATGAAGAGCAACAAGTTTCGGTTGTCGATC
GATGATGCCAACGTCATTCAGGTGCTCCACACCAATGCCGGTTTCCTGGG
CCAGGAGGATAACTCCGGGCATCTAAACTACTGTGTCAACGGTGGACGCA
TCCAGCCGTTCTGCAAAGGAAATCCAATCAGAAAATCGCGATGTTCGCAC
TTCTTGAGCATCTGCTACTTGGCCACTGCCACATTTAAACACAATAAGTT
CATGGGAGTACCGTGTCCCAATGGCTGCCTGAATCTTAGTGGATCCAAGA
GGCTGCCAGTGAGCGGCAAAGTGAATCCCTTCGAGTTCGCCTCGCTGATA
AGGAGTACCACATAGGCAACGATGCCCCGATGACGCCCGAGCTGCATTTG
CATGATGTGCCGTATGCCAAGCACTGCCCCTTTACGGATGCGCAAGCCTT
CTAGAACAATTCGTTTGGGCGCCGCGGCCCAGGT

FMO10312.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6431-RB 1689 CG6431-RB 585..1622 9..1042 5090 99.6 Plus
CG6431-RC 1191 CG6431-RC 275..1124 197..1042 4150 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10727833..10728269 345..781 2185 100 Plus
2L 23513712 2L 10728352..10728550 781..978 945 99.5 Plus
2L 23513712 2L 10727605..10727753 197..345 745 100 Plus
2L 23513712 2L 10726300..10726443 53..196 720 100 Plus
2L 23513712 2L 10726099..10726144 9..54 230 100 Plus
2L 23513712 2L 10728621..10728673 991..1042 215 98.1 Plus
Blast to na_te.dros performed on 2014-11-26 17:10:09 has no hits.

FMO10312.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:59 Download gff for FMO10312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6431-RB 560..1600 9..1046 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:51 Download gff for FMO10312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6431-RB 585..1622 9..1042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:56 Download gff for FMO10312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6431-RB 585..1622 9..1042 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:56 Download gff for FMO10312.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10726099..10726144 9..54 100 -> Plus
2L 10726302..10726443 55..196 100 -> Plus
2L 10727605..10727753 197..345 100 -> Plus
2L 10727834..10728268 346..780 100 -> Plus
2L 10728352..10728556 781..983 99 -> Plus
2L 10728613..10728673 984..1042 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:51 Download gff for FMO10312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10726099..10726144 9..54 100 -> Plus
arm_2L 10726302..10726443 55..196 100 -> Plus
arm_2L 10727605..10727753 197..345 100 -> Plus
arm_2L 10727834..10728268 346..780 100 -> Plus
arm_2L 10728352..10728556 781..983 99 -> Plus
arm_2L 10728613..10728673 984..1042 96   Plus