FMO10313.5prime Sequence
1165 bp (1040 high quality bases) assembled on 2010-11-12
> FMO10313.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGAACCACCGCTATTGGGACCC
GGAGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACACCACCACACC
GGAGAACTGGAAGGGGGCCGCCATCCATCCCACTGGCTTGATGAAGGAGC
CCGCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTTCACACCGCAA
GGACAGGCTCAGGGCGCCGTCATGATGGTCTACGGCCTGGACCACGACAC
TTCCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTACGGCAACGTGG
CACGGATCAAGTTCTTGAAGACCAAAGAGGGCACCGCCATGGTGCAAATG
GGAGACGCTGTGGCCGTTGAGCGTTGCGTGCAGCACTTGAACAACATTCC
CGTGGGCACTGGTGGCAAGATACAGATCGCTTTCTCCAAACAGAACTTCC
TATCCGAGGTGATCAACCCGTTCTTGCTGCCCGATCATTCGCCCAGCTTC
AAGGAGTACACCGGCTCCAAGAACAATCGTTTCCTATCGCCGGCCCAGGC
GAGCAAGAATCGCATTCAACCACCGAGCAAGATTTTGCACTTTTTCAACA
CACCGCCCGGCTTGACCGAGGACCAACTGATTGGAATCTTTAACATCAGG
ATGTGCCCGCCACATCGGTGCGCCTGTTCCCCTTGAGACGAGCGCTCGTC
GTCGGGACTGATCGATTTCATATTCTCGCAGGCAGTTGCTGCTTTCATTG
AAATGCACATCTGCTATTGGAGGTTAAGCACCAAGCTCCCATCATCATGA
AGCCTTGTGCTTTCCTCTATCAGAGACATGAAGCCGCCTGACATGCGCAG
CGAGGCCTGATCGAA
FMO10313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RB | 1783 | CG9218-RB | 301..1473 | 8..1164 | 5095 | 96.7 | Plus |
| sm-RW | 1179 | CG9218-RW | 19..869 | 330..1164 | 3485 | 95.4 | Plus |
| sm-RV | 3190 | CG9218-RV | 1642..2492 | 330..1164 | 3485 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19546449..19546771 | 330..8 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 881..605 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 19538029..19538212 | 513..330 | 905 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19532238..19532376 | 1015..880 | 550 | 96.4 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 605..509 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:10:46 has no hits.
FMO10313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:06 Download gff for
FMO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 257..1297 | 1..1036 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:19 Download gff for
FMO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 295..1335 | 1..1036 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:21 Download gff for
FMO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RB | 295..1335 | 1..1036 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:21 Download gff for
FMO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532436..19532711 | 606..881 | 100 | <- | Minus |
| 2R | 19537776..19537868 | 513..605 | 100 | <- | Minus |
| 2R | 19538030..19538211 | 331..512 | 99 | <- | Minus |
| 2R | 19532214..19532374 | 882..1036 | 95 | <- | Minus |
| 2R | 19546449..19546774 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:19 Download gff for
FMO10313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15425281..15425373 | 513..605 | 100 | <- | Minus |
| arm_2R | 15425535..15425716 | 331..512 | 99 | <- | Minus |
| arm_2R | 15433954..15434279 | 1..330 | 98 | | Minus |
| arm_2R | 15419719..15419879 | 882..1036 | 95 | <- | Minus |
| arm_2R | 15419941..15420216 | 606..881 | 100 | <- | Minus |
