FMO10317.5prime Sequence
973 bp (973 high quality bases) assembled on 2010-11-12
> FMO10317.5prime
CAGTCGACATGTCGTTCCTGGGCAACACATCCGATCTGGAGTGCGAAAAG
AACGAGTTCCCGAGGCAGCGACCCTCGGGCATCATCACCAAGGTGGCCGC
CCACAAGCTCTCCGCGGAGCCCAAGTGGACGGACAAGCGGGAGGATGACT
CCGATTCGGAGGTCTCGTCGCCGGATAATTTCCTGACCAAAGGCGCCTTC
CTATTGACCCCATCCTACGAGTTGTCCATGGAACGGGCGGCCCTCATCTG
CGAGAAGATGGCATTCAAGGGATGCTTCAGCTTGACCAAAACCGCTACAG
GCATTCTGTTTAAATTCTCACATCCAGATGACTATCAGGCGGTGTTCAAG
AAGGGCTTCCACAAGGTTACCGGGGCGCGATTCTACCGCAAGATTGCCAT
ACCGTGTCGGCAGAGGAAGACCTTCACCCTGTACGTGCTGGATGTGCCCG
AGGATCTGCCCGTGGAGGATATCCGGCATGCCATGTACAAGTTCGATTCG
GTGGTGGAGGTGGTGCGCCTGCACATCTACTCGAGCCTCGCCAGCAATGC
CGCCAATGCCACCTCCTCCTCCGCCGTTGCCGCCAGCAGCTCCTCCGGCG
GCGGTGATAAGGGCGTCGAAGGCGTCTCCAAGAGCGTGGGTTCTGTGGTG
GGCGATGCCATCGAGAAGGCCGAGCGTCCTGAGCGCAGAGAACTGCCTCC
AGCCGTTATCCGGGTCACCCTGGCCTCCATGGATGAGTACAACATTCTGT
TGCAGAACGGACTCAACTTCTACGATGCCACGTTCTTTCCCACTGAGGCC
AACATCTCGCTGAAGGGCGCCAAGATCGATTATAAGCGCAGAATGCTCGA
TGGCTCGATTCCCGGACGGGTGAGGGAACTGCTGCCCGTTTCGATGCGGC
TGGCTTCTGCAAGCTGCCACCGCCCACCAGCAAGCTAATTAAGCCGCCGA
GGTCGGCAAGCTTTCTAGACCAT
FMO10317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14445-RB | 1548 | CG14445-RB | 164..1113 | 7..955 | 4710 | 99.8 | Plus |
| CG14445-RA | 1608 | CG14445-RA | 164..779 | 7..622 | 3065 | 99.8 | Plus |
| CG14445-RD | 1668 | CG14445-RD | 164..549 | 7..392 | 1930 | 100 | Plus |
| CG14445-RA | 1608 | CG14445-RA | 839..1173 | 622..955 | 1650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6238944..6239175 | 391..622 | 1145 | 99.6 | Plus |
| X | 23542271 | X | 6239386..6239607 | 620..841 | 1110 | 100 | Plus |
| X | 23542271 | X | 6237999..6238200 | 191..392 | 1010 | 100 | Plus |
| X | 23542271 | X | 6237478..6237664 | 7..193 | 935 | 100 | Plus |
| X | 23542271 | X | 6240006..6240123 | 839..955 | 540 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:10:58 has no hits.
FMO10317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:08 Download gff for
FMO10317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 156..1117 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:27 Download gff for
FMO10317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 158..1119 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:28 Download gff for
FMO10317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14445-RB | 158..1119 | 1..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:28 Download gff for
FMO10317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6237472..6237663 | 1..192 | 97 | -> | Plus |
| X | 6238001..6238200 | 193..392 | 100 | -> | Plus |
| X | 6238946..6239174 | 393..621 | 99 | -> | Plus |
| X | 6239388..6239607 | 622..841 | 100 | -> | Plus |
| X | 6240009..6240129 | 842..963 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:27 Download gff for
FMO10317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6131505..6131696 | 1..192 | 97 | -> | Plus |
| arm_X | 6132034..6132233 | 193..392 | 100 | -> | Plus |
| arm_X | 6132979..6133207 | 393..621 | 99 | -> | Plus |
| arm_X | 6133421..6133640 | 622..841 | 100 | -> | Plus |
| arm_X | 6134042..6134162 | 842..963 | 95 | | Plus |
