FMO10319.5prime Sequence
1136 bp (992 high quality bases) assembled on 2010-11-12
> FMO10319.5prime
CAGTCGACATGAATGAAGGCTTCGAACCTGCAACGCATGGCATCAGCAAA
ACGGACGGAAGCTGCATCAGCCACCACAGTCAGAGCAACGGGAACGGAAT
CGAAGGCGTCAACGGAGGCGGAATCGTCGGCCACCATCTCGGTGGAGTCC
TGCGCACCACTGACCTGGCCAGCGGGGCCATGGAATGCCTGCCGATGAGC
AGTGCTGCCCATCACCCACATCTGATGGCGGGTGCATCGGCGGTAGGAGC
CGTTTCCGCCTCTCCCACGGCGACCGTGGTGGTGGGTGCCACGTATCCGC
ACCACCTGCACCACCACCACTTGAGCCACCACACGCCGTACAGCAATAGC
TACGGGAGCCACCACATACACAGCGAGCAAACCAAGTCGCTGCAGGAGCT
GCAGCACGAGGTTGGCGCTCTGCTGGAGTTCCGGGACCTGGTCATAGAAA
CTTTTCCCGACCTCAAGCACAAGATGGCCTCCATGTCCGCAACGCCCTCG
ACTCCCACGTCTTCGGTGGGTGCCATCGGTGGCAGTCACTCGGTAGGTGG
CGGCAGCTCCTCTCTGGCCACCAGCAGACGTGAGTGGGAGCCGGGCATAC
GGATGAAGCGAAAACAGTCGCACAAAGAACCGTCCACGTCGTCAGCGGCA
GCTGCTCCTTCCTCCGGAGCTGAGGCGTCGTCCTCGTCGCTGACACGCAG
CCGTAGCAACTCGCACAGCGGCAAGAAAGAGCCCAAAGAGCGGAGAGAAC
AACAACGGAAGCGTTGTGCAAGACTCCGGCTTCTCAACGGAGACCAGTTC
CTCCAAGGAGGGCCACAGTGCCTCCTCCACCAACGGTGCTATGACGGTGG
CCATAGCAGCGAATCGCCTGAGCTGCGCGGAATCGGACGATGAGTTGCTC
AACCTGCTGGACGTTATTCACGGCAAGTCCATCGATTACGCGAAGGAAGT
GGAGCACTTGCAGAGCTATGAGCGCCATCACGGGGATGCTTCAGAAGACA
GAAGGCTAATGTCAGGGTGCGAGCCAGGGAGGTATATGACATCGCAGCAC
TTTCGAATAGCAGGGTGGAGCGATAAATCGCGAGAGAATATTCAAAACGT
CGCCCAGGACGCGAACGGCTCTGCTTGACAGTGGCG
FMO10319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-RA | 6436 | CG43162-RA | 1006..2078 | 7..1084 | 4980 | 98 | Plus |
| jvl-RD | 5350 | CG43162-RD | 1006..2078 | 7..1084 | 4980 | 98 | Plus |
| jvl-RF | 6493 | CG43162-RF | 1006..2078 | 7..1084 | 4980 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14788056..14788619 | 11..574 | 2820 | 100 | Plus |
| 3R | 32079331 | 3R | 14788693..14788968 | 572..848 | 1335 | 99.6 | Plus |
| 3R | 32079331 | 3R | 14789025..14789206 | 846..1028 | 665 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:11:05 has no hits.
FMO10319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:09 Download gff for
FMO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3563-RA | 996..2039 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:32 Download gff for
FMO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RF | 996..2039 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:32 Download gff for
FMO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RF | 1001..2044 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:32 Download gff for
FMO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14788047..14788619 | 1..574 | 99 | -> | Plus |
| 3R | 14788696..14788966 | 575..846 | 99 | -> | Plus |
| 3R | 14789026..14789225 | 847..1049 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:32 Download gff for
FMO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10613769..10614341 | 1..574 | 99 | -> | Plus |
| arm_3R | 10614418..10614688 | 575..846 | 99 | -> | Plus |
| arm_3R | 10614748..10614947 | 847..1049 | 93 | | Plus |
