Clone FMO10320 Report

Search the DGRC for FMO10320

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33333-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10320.5prime Sequence

470 bp (470 high quality bases) assembled on 2010-11-12

> FMO10320.5prime
CAGTCGACATGGCAGTCGGCTTCATTGTAATCTTCAGCGCCATATTCGTC
CTGGCCCAAGGATCAAATCTTTTGCCCATTGAGCAGCAATCGGAGGTGCC
AATCCATTCTGGTGCTCCAGCGGCAGTCATTTCGCAAGGACAACAGTCTG
TGTCCCAGTCCGTTGGTTCTGCTTACGGTCAAGACCAAGGGTTGGCTGGT
GCACGACCCTATTGGGCTGCACCTCGTCCTGCTCTGGCTGCACCTCGTCC
TGCTGAGTCCTACGCTCGTCCTGCTGTGGCTGTACCTCGTCCTTCTGTGG
CTGCACCTCGTCCGGCTGTGTCCTACGCTCGTCCTGCAGCCGTGGTGGTT
CCTGCTTTGGTGGTTGCTCCTATTCGCCAGCCTCAGGGAGTCCCTGTCCC
AGCCGTTGTAGGAGCTAGTCAAGGAAATGTGTACCATGGTCGCCATCATG
GCGCAAGCTTTCTAGACCAT

FMO10320.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33333-RA 576 CG33333-RA 18..461 9..452 2220 100 Plus
CG33333-RA 576 CG33333-RA 224..283 278..337 225 91.7 Plus
CG33333-RA 576 CG33333-RA 287..346 215..274 225 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17417484..17417927 9..452 2220 100 Plus
3R 32079331 3R 17417690..17417749 278..337 225 91.7 Plus
3R 32079331 3R 17417753..17417812 215..274 225 91.7 Plus
Blast to na_te.dros performed on 2014-11-26 17:11:09 has no hits.

FMO10320.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:10 Download gff for FMO10320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33333-RA 1..447 9..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:34 Download gff for FMO10320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33333-RA 9..466 1..458 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:34 Download gff for FMO10320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33333-RA 9..466 1..458 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:34 Download gff for FMO10320.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17417475..17417932 1..458 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:34 Download gff for FMO10320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13243197..13243654 1..458 98   Plus