Clone FMO10330 Report

Search the DGRC for FMO10330

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:30
Vector:pMK33-CFH-BD
Associated Gene/Transcriptsvr-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10330.5prime Sequence

1099 bp (1013 high quality bases) assembled on 2010-11-12

> FMO10330.5prime
CAGTCGACATGCCAGCTCTGGGTCTCCTGTTCGCCTCCATCGGCATTGCC
GTGCTGGCGATGGGTGTGCCGCATTGCAGGGGCTACACCATCAAGGAGGA
CGAATCCTTCCTGCAGCAACCGCACTATGCTAGCCAAGAGCAGCTGGAGG
ACCTGTTTGCTGGCCTGGAGAAGGCGTACCCCAATCAGGCCAAAGTCCAC
TTCCTTGGTCGATCTCTAGAAGGACGAAATCTGCTCGCCCTGCAAATCTC
GCGGAACACCCGGTCGCGGAATCTCCTTACACCTCCAGTAAAGTACATAG
CCAATATGCATGGAGACGAAACGGTGGGCAGGCAGCTCCTTGTTTATATG
GCACAATATCTGCTCGGTAATCACGAAAGAATCAGCGACCTGGGCCAGCT
GGTCAACAGCACCGATATCTACTTGGTGCCCACGATGAATCCAGATGGCT
ATGCGTTGTCCCAGGAAGGCAACTGCGAGTCGCTGCCCAACTATGTGGGT
CGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCCGATCGCCT
GGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCAGCCGGAAA
CAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGCTCTCCGCC
AATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGACAACTCCTT
GGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGATCGGGTCT
TCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTATGAGAAAG
GGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAACGGAGCCCA
CTGGTATGAGTTGTCCGGTGGAATGCAGACTTTAACTATGCGTTTAGCAA
CTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAGTATCCGGCAGCAAG
CACTTTGCCCAGAATGCAGCGGACAGCATCCTGCTGCAGCTGCTGCGCAG
CACATATCGCATCAGGCCTGGTGACCGATGCAGTGGCTTTCATAGCGATG
CATGTTCTACGTGCTGACATAAGAGAAACCCATGGCGCCCTCACCTGCG

FMO10330.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
svr-RN 4986 CG4122-RN 196..1293 9..1084 4890 97.5 Plus
svr-RM 5611 CG4122-RM 196..1293 9..1084 4890 97.5 Plus
svr-RL 2851 CG4122-RL 196..1293 9..1084 4890 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 500153..500609 9..465 2270 99.8 Plus
X 23542271 X 502287..502548 701..960 1210 99.2 Plus
X 23542271 X 501982..502221 462..701 1200 100 Plus
Blast to na_te.dros performed on 2014-11-26 17:11:31 has no hits.

FMO10330.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:14 Download gff for FMO10330.5prime
Subject Subject Range Query Range Percent Splice Strand
svr-RG 469..1581 1..1095 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:49 Download gff for FMO10330.5prime
Subject Subject Range Query Range Percent Splice Strand
svr-RB 469..1581 1..1095 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:48 Download gff for FMO10330.5prime
Subject Subject Range Query Range Percent Splice Strand
svr-RL 190..1302 1..1095 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:48 Download gff for FMO10330.5prime
Subject Subject Range Query Range Percent Splice Strand
X 501985..502220 465..700 100 -> Plus
X 500147..500608 1..464 98 -> Plus
X 502287..502701 701..1095 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:49 Download gff for FMO10330.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 394180..394641 1..464 98 -> Plus
arm_X 396018..396253 465..700 100 -> Plus
arm_X 396320..396734 701..1095 92   Plus