FMO10334.5prime Sequence
1147 bp (1005 high quality bases) assembled on 2010-11-12
> FMO10334.5prime
CAGTCGACATGTATCCAGTTGGACAACAGTCACAGTGGACCCCCTCGCCC
ACTCGGCCTCAGAGTCCCTCTCAGGCGCAGACTAGCTTCGACACGCTCAC
ATCACCACCAGCGCCCGGCTCGTCGGTCAATCCCACCGCCGTCACCAGCC
CAAGTGCCCAGAATGTGGCCGCTGGTGGAGCAACTGTGGCCGGTGCAGCA
GCAACTGCCGCCCAGGTGGCCTCCGCCTTGGGTGCCACCACCGGCAGCGT
GACGCCAGCAATTGCCACCGCAACGCCAGCCACGCAGCCGGATATGCCCG
TCTTTACGTGTCCACGACGCCCGAATCTCGGACGAGAGGGTCGCCCGATT
GTGCTGCGCGCCAATCACTTCCAGGTGACAATGCCGCGTGGCTATGTGCA
TCACTATGACATCAATATACAGCCGGACAAGTGTCCGCGAAAGGTGAACC
GTGAGATTATCGAGACTATGGTGCATGCCTATAGCAAGATCTTCGGAGTG
CTCAAGCCGGTGTTCGATGGTCGCAACAATCTGTATACCCGCGATCCCCT
GCCCATTGGCAACGAGCGTCTAGAGCTGGAGGTTACTCTACCCGGCGAGG
GCAAAGATCGAATCTTTCGCGTGACGATCAAGTGGCAGGCTCAGGTCTCG
CTCTTCAATTTGGAGGAAGCTCTCGAAGGCCGCACGCGGCAGATACCCTA
TGATGCCATTTTGGCGCTCGATGTGGTCATGCGCCATCTGCCCAGCATGA
CGTACACGCCAGTGGGACGTAGCTTCTTCAGTTCCCCGGAGGGTTACTAC
CATCCCCTGGGTGGTGGACGCGAGGTTTGGTTCGGTTTCCATCAGAGCGT
AAGCCCTCGCAGTGAAGATGATGCTCAATATCGATGTCTCGGCCACCGCT
TTCTACAAGCTCAACCAGTCATTGACTTCATGTGCGAGTGCTGGACATTC
GCGACATCAACGAGCAGCGCAAACCGCTCACCGATTCCCAGCGCGTCAAG
TTCACCGAAAGAAATCAAGGATTTGAAAATCGAAATCACCCACTGCCGTC
AGATGCCTCCCAGATATCTTGTGTTGCAACGTCATCGCCGCCCGCCTCAA
ATGCAATTCATTCCCACTTGCACCTGAACGACAAACGTGAAGTGCCC
FMO10334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO1-RB | 5738 | CG6671-RB | 321..1434 | 7..1118 | 5145 | 97.9 | Plus |
| AGO1-RD | 7888 | CG6671-RD | 470..1562 | 28..1118 | 5040 | 97.8 | Plus |
| AGO1-RA | 3481 | CG6671-RA | 213..1305 | 28..1118 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13950132..13950917 | 886..103 | 3830 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13949851..13950073 | 1107..886 | 635 | 90.7 | Minus |
| 2R | 25286936 | 2R | 13951614..13951688 | 102..28 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:11:15 has no hits.
FMO10334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:11 Download gff for
FMO10334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 287..1350 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:39 Download gff for
FMO10334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 316..1379 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:37 Download gff for
FMO10334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 316..1379 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:37 Download gff for
FMO10334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13949896..13950072 | 887..1062 | 92 | <- | Minus |
| 2R | 13950132..13950917 | 103..886 | 99 | <- | Minus |
| 2R | 13951614..13951688 | 28..102 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:39 Download gff for
FMO10334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9837401..9837577 | 887..1062 | 92 | <- | Minus |
| arm_2R | 9837637..9838422 | 103..886 | 99 | <- | Minus |
| arm_2R | 9839119..9839193 | 28..102 | 100 | <- | Minus |
