Clone FMO10336 Report

Search the DGRC for FMO10336

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:36
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10336.5prime Sequence

800 bp (800 high quality bases) assembled on 2010-11-12

> FMO10336.5prime
CAGTCGACATGGAACTGCGGAGCAAACATCGCATAATGGGTGCTCCAGTG
GGCACAGCGAACACAAAAGGCTGGAGTCCTAATCAATCCACTCTGCCCGT
GGAGCTCAGTAAATTTGAAACCCAATTGCTTTTGGATGAGAATATAGCAA
AGTTAGTTGATAAATCCAAAGATCTAAAGGCTAAACCCACTGCCGAGAAA
CTTGAGGAGTGCAAGGCGGATTTTGAATCCCGGTTACTGGGACAGGAGGA
AGCATTGAAAACGGAGAAACTACGGGAAACTGAACGATACATGGATAAGA
TTCTGACGGGAAAACGCAAGAAGTTGCTCAAGCAGGGCAAAAATGAATTG
GCTGCCGCTCTGACTGATAAGGATGTACTATTGGAGATGTCTGTGAATTT
CAAATTCGATCGCCAAAATGCCTTGCTGGAGGTGCATTGTGAACATCCCA
CGGATCACTCTGCGCAAATAGTTACCGGTCCCATTGTGCACACCAATTCC
CTGAAATACCGCGTTTTCAAAGATCTGTGGAGGCGCGGAAAGTACGTGAC
TTCCGGCGATGCATTTGGAGCGGACTTTCTGGTTTACCCCGGCGATCCCA
TGATCTACCACGCCTCCCACATTGTAATTTTGCACGAGCAACCTGTAATT
AAGCCCCTGGAACTGATAGCAAAAGTTCGTCTATCGGTAATTGTCAACAA
AAGCTGCGTTTTCGCCTACGAGATGGAAAATAATGAGGAAGAAATACATT
ACCAAACGGTCGCATGGTGCAATCTTGGAAAAGCAAGCTTTCTAGACCAT

FMO10336.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33260-RC 902 CG33260-RC 65..840 7..782 3880 100 Plus
Trl-RF 2613 CG33261-RF 1..406 377..782 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14760582..14760904 782..460 1615 100 Minus
3L 28110227 3L 14761292..14761552 351..91 1305 100 Minus
3L 28110227 3L 14760967..14761075 459..351 545 100 Minus
3L 28110227 3L 14761640..14761723 90..7 420 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:11:21 has no hits.

FMO10336.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:12 Download gff for FMO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33260-RB 1..777 9..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:42 Download gff for FMO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 61..840 1..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:42 Download gff for FMO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33260-RC 61..840 1..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:42 Download gff for FMO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14760582..14760904 460..782 100 <- Minus
3L 14760967..14761074 352..459 100 <- Minus
3L 14761292..14761552 91..351 100 <- Minus
3L 14761640..14761729 1..90 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:42 Download gff for FMO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14753682..14754004 460..782 100 <- Minus
arm_3L 14754067..14754174 352..459 100 <- Minus
arm_3L 14754392..14754652 91..351 100 <- Minus
arm_3L 14754740..14754829 1..90 96   Minus