FMO10338.5prime Sequence
1093 bp (992 high quality bases) assembled on 2010-11-12
> FMO10338.5prime
CAGTCGACATGATGGAGTTCGGGAAATCGTCGGATCACTCCCAGCACAGC
GCTTCCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGCGATCTGGC
CGTCACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCACCAGTTCGG
ACAACAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGTCCTCGGTG
GCGGACACCACCTTTGAGCCCACCATCGACATGATGGTCAACGACTTTGA
CGACGAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACATGGAGGCGC
ACAGTGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCGAGATGCCC
ATCGAGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCGCCGGCAAT
GAGCAGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACGTAGGGCCA
CAAAGCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACACGTCGACC
TCCACTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGCATAGACCA
GGAGGAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACCCCCAGAAT
CAGGAGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGTATGAGGGG
ATCAAGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCAGATGAATC
CTTCGTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAGATTCACTC
CACTGCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGGAGGAAAGC
GAATCCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGTCACGACTA
TCAGCTGAGATCCCAGAGGGGCTGTCGCATATGGCGATATATTGCCATAT
GAGAACGAGGATCAGTTGATCTGGGAGCCCAGCCAAGTCAGCGAGCGCGA
GGTGAGGATATCTGGCAGATACAGGAACCCGATCGATAGTTCGCGATGAC
GGTCAAAGACTACGGCGGGGCGAGGAGGCCCAGCTACAGGTGCTACTTAT
CGAACCGCGCTCCATACGCTCAGGCCAGCCCTCGAGGATCGCT
FMO10338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-RC | 2204 | CG1620-RC | 87..1146 | 9..1058 | 4950 | 98.5 | Plus |
| CG1620-RB | 2272 | CG1620-RB | 87..1146 | 9..1058 | 4950 | 98.5 | Plus |
| CG1620-RA | 2529 | CG1620-RA | 206..1265 | 9..1058 | 4950 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7495526..7496261 | 744..9 | 3680 | 100 | Minus |
| 2R | 25286936 | 2R | 7495138..7495461 | 1058..745 | 1000 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:11:57 has no hits.
FMO10338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:19 Download gff for
FMO10338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1272 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:05 Download gff for
FMO10338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1272 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:00 Download gff for
FMO10338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1272 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:00 Download gff for
FMO10338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7495131..7495461 | 745..1063 | 94 | <- | Minus |
| 2R | 7495526..7496261 | 9..744 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:05 Download gff for
FMO10338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3382636..3382966 | 745..1063 | 94 | <- | Minus |
| arm_2R | 3383031..3383766 | 9..744 | 100 | | Minus |
