Clone FMO10339 Report

Search the DGRC for FMO10339

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:39
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10339.5prime Sequence

884 bp (884 high quality bases) assembled on 2010-11-12

> FMO10339.5prime
CAGTCGACATGAACCTCGAGCAGCAGGGGATGGATCCGCAAGGGGTGGAA
AACCAGCAGGAAATCGTCCAGGCAGCCGAAGGAGAACAGCAGTTGCAAAG
TTGCTGTAAGGTCTTCAAAATGAAGGGATCGACGCTGGACAAAATCTCCG
CCTTCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGC
ATGGGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGT
GCTGAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCG
TCTCCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTAC
GAGATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCT
GGGCGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCA
CACTTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTA
ACCACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGT
CATCGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACT
CCGTGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCC
GGTCCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGC
CCTGTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGC
TGAGCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCTTCCGCCGC
GAGGTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGGCAACTGGA
GGACGTCCAGCTGTCGGCAAGCTTTCTAGACCAT

FMO10339.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-RE 1183 CG4019-RE 82..939 9..866 4290 100 Plus
CG4019-RF 1271 CG4019-RF 260..1027 99..866 3840 100 Plus
CG4019-RD 1128 CG4019-RD 117..884 99..866 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23608131..23608683 651..99 2765 100 Minus
2R 25286936 2R 23607836..23608051 866..651 1080 100 Minus
2R 25286936 2R 23608931..23609022 100..9 460 100 Minus
2R 25286936 2R 23604625..23604800 427..252 400 81.8 Minus
2R 25286936 2R 23606358..23606443 342..257 205 82.6 Minus
Blast to na_te.dros performed 2014-11-26 17:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4100..4150 874..822 116 71.7 Minus

FMO10339.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:19 Download gff for FMO10339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RD 78..849 99..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:07 Download gff for FMO10339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RE 75..943 1..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:01 Download gff for FMO10339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RE 75..943 1..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:51:01 Download gff for FMO10339.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23608132..23608681 101..650 100 <- Minus
2R 23608931..23609027 1..100 97   Minus
2R 23607832..23608051 651..871 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:07 Download gff for FMO10339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19495355..19495574 651..871 99 <- Minus
arm_2R 19495655..19496204 101..650 100 <- Minus
arm_2R 19496454..19496550 1..100 97   Minus