Clone FMO10342 Report

Search the DGRC for FMO10342

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:42
Vector:pMK33-CFH-BD
Associated Gene/Transcriptsu(r)-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10342.5prime Sequence

1106 bp (1002 high quality bases) assembled on 2010-11-12

> FMO10342.5prime
CAGTCGACATGAGTCCGCCCCAACTTTTGAGCAAGGACTCCCCAGATATT
GAGGACCTGCTGTCGCTAAATCCGCGAGTGAAGACGCAGTGCTCCGTGGT
GCCCACCAAGCAGACGAAGGAGAACAAGAAGCACTGGAAACGCAATGCGG
ATCACGCTGCTCCGCCGTGCACCACGCTGGCCAACGACTTCTCGGACATC
AAGCACACCACATTGTCGGAGCGCGGAGCTCTAGAGGAGGCGGCCAGGTG
CCTCAAATGCGCCGATGCTCCGTGCCAAAAGTCCTGTCCCACGCAGCTGG
ACATCAAGAGCTTCATTACGAGCATTGCGAATAAGAATTTCTATGGCGCC
GCCAAGGCGATCTTCTCCGACAATCCGCTGGGTCTGACCTGCGGCATGGT
CTGTCCCACCAGCGATCTCTGCGTGGGCGGTTGCAATCTGCAGGCCTCCG
AGGCGGGACCGATTAACATTGGTGGCCTCCAGCAGTTCGCCACCGAGGTG
TTCAAGAAGATGGGCGTGCGGCAGCGGAGGACACCGCAGGCGGAGGCCAA
TCCGCTGTCGCAAAAGATCGCCCTCGTGGGCGGCGGACCGGCATCGCTGT
CGTGCGCCACCTTCCTGGCCCGTCTGGGCTATCGGGATGTGACCATCTAC
GAGCGGAGAAGCTATCTGGGTGGCCTGAGTGCCGCTGAAATTCCCCAGTA
TCGTCTGCCCATCGATGCGGTTAACTTTGAGATCGATTTGGTTCGCGATC
TGGGCGTACGCATCGAAACGGGTCGCTCGCTGGGCACCAAGGATTTGACC
ATCCAGGGACTCCTGTCCACCGGCCATGATGCCGTCTTTGTGGGCATTGG
CCTGCCGGACCGAAGCTGATCCCATTTTCGCTGGGCTTCAGCCCAGCAAT
GGTTTCTACACCTCGAAAACTTCCTGCCCTGTGTCGGATGGCTCGAACCG
GGTTTGTGCGCTGCAAGCAGCGGCCGTTACCAAGCTCCATGCATGTCATC
GTTGGGTGCCGGTGATACGCTTCGAATGCCCCTCGGCCTGAAATGTGGTG
CTAGCCTGGTTCGTCGTCTCCGCAGATCTCGGCATCGTCCTGGCGAAAAG
TGACTG

FMO10342.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
su(r)-RC 3399 CG2194-RC 221..1310 9..1074 4835 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9199160..9200075 961..52 4300 99.2 Minus
X 23542271 X 9200132..9200177 54..9 230 100 Minus
Blast to na_te.dros performed on 2014-11-26 17:09:07 has no hits.

FMO10342.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:48 Download gff for FMO10342.5prime
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 210..1306 1..1074 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:06 Download gff for FMO10342.5prime
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 210..1306 1..1074 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:18 Download gff for FMO10342.5prime
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 214..1310 1..1074 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:18 Download gff for FMO10342.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9199029..9200073 54..1074 97 <- Minus
X 9200133..9200184 1..53 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:06 Download gff for FMO10342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9093062..9094106 54..1074 97 <- Minus
arm_X 9094166..9094217 1..53 94   Minus