FMO10343.5prime Sequence
1124 bp (1034 high quality bases) assembled on 2010-11-12
> FMO10343.5prime
CAGTCGACATGCTGCACAACAATCGCGACATTGCAGAGCCAAACACAACA
ACAACAGCAGCAACAGCTACCCCAATCACAACAACAACTGCAGCAGCAGC
AACAACAGAAGGCAATGGAACGGAGCCAACAATTGCCACGCACCTTGCAA
CAACATCTGCTGCTGCAGCAAAGACATCAGCTGGCGTAGGGGAAACAAGT
GCAACAGCTGAGGGTCAAACACCAGCAACAACAACAACAGCAGCTGTGGC
AGAGCGAACGAAATTAGCACAAACAGCTGATGCGACTGCTGCGCCGATCG
TTGATGCGACTGCTGCTGCGGCTGCAGCTACTGAAGCGACCGCATTCGAT
GCTCAGATGCGAACGCAGCAACGACACAAGATCAAGATATACCACGATGC
CAAGCAGACGGCCGTGTGGCGCACCGATTCGCTGGCCTCCAATCCCAGCT
CGACTATCTGCCCGGATTTCGTCAGTTCGGGATCAGGAGGTGTTGCAGGT
GGTGTCGGTGGCACTGTCGCTGGCGGAGGAGTCACTGGAGCCCTGGGCCT
GCCCCCCAGGGGCATCATCCTGTCGACGGCGCCCAGCCTCCTGCAGCGAA
AATCATCGGACAGCTCGCTCACCTCGTCCATTGCGCGACGCGTCTCGTTT
CCGGATAACCAGCTGGTCACCGGCTACCTGGAGCCGGCCAATCCTTGGAA
GCAAGTATACCTCGTGAAGAGCAGCTCCGAGATTGTCGATCAGTATCAGC
AGTCGTGTAAGAAGCACAACACCCAGCCATTAGAGAGCGTAGTGGATCAC
CTGAGGACCCTGGATCTGAACCAAGCGCGGCAGCCTTTACTTCCTCTTAA
AGCGAAAGATTTACCCGCCAACGATTGCGAAGCGCTCGAGGAGATTTTCA
AACGGATACATACACATGCATCGATCTGTCCGAGTGCACGCTGGACGAGA
GCAGTTTAATGGCCTCTTCCAGATGATCGATACTATGAGCTGCCAATGAG
CTGGACATTTCCTACAACAAGGCGGAAATGACAAAGCGCTGCTGGGAACT
GTGTTGCTACATGGTGGAGCGCACCCAAAGCTTCCAGCCTGCTCACCGCG
AGCATCGGATTAACAAAGTTGGGG
FMO10343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31635-RB | 6115 | CG31635-RB | 505..1625 | 9..1123 | 5175 | 98 | Plus |
| CG31635-RH | 6032 | CG31635-RH | 365..1485 | 9..1123 | 5175 | 98 | Plus |
| CG31635-RG | 7738 | CG31635-RG | 365..1485 | 9..1123 | 5175 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6645972..6646668 | 705..9 | 3470 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6640735..6640936 | 905..704 | 980 | 99 | Minus |
| 2L | 23513712 | 2L | 6640499..6640670 | 1078..910 | 635 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-26 17:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7014 | 85..396 | 299 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6923 | 46..235 | 299 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2485 | 46..245 | 260 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6913 | 49..246 | 251 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2617..2966 | 38..380 | 248 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2551 | 93..390 | 230 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2466 | 99..277 | 210 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6899 | 114..292 | 206 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2843..2989 | 90..239 | 204 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6551..6897 | 40..387 | 196 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6929 | 188..399 | 183 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1035..1176 | 108..257 | 175 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6851 | 166..292 | 174 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6944 | 49..449 | 160 | 53.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 163..268 | 154 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2385 | 201..277 | 141 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1605 | 194..275 | 139 | 67.1 | Plus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1737..1783 | 207..253 | 127 | 74.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7986 | 197..251 | 124 | 71.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9375..9430 | 197..251 | 124 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1121 | 216..277 | 121 | 66.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 109..201 | 173..264 | 119 | 62.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9139..9231 | 173..264 | 119 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1586 | 127..189 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2373 | 220..292 | 117 | 67.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7962..8018 | 218..274 | 113 | 70.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9406..9462 | 218..274 | 113 | 70.7 | Plus |
FMO10343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:49 Download gff for
FMO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31635-RB | 1942..3067 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:08 Download gff for
FMO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31635-RG | 360..1485 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:20 Download gff for
FMO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31635-RG | 360..1485 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:20 Download gff for
FMO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6640450..6640675 | 906..1124 | 91 | <- | Minus |
| 2L | 6640735..6640934 | 706..905 | 99 | <- | Minus |
| 2L | 6645972..6646673 | 1..705 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:08 Download gff for
FMO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6640450..6640675 | 906..1124 | 91 | <- | Minus |
| arm_2L | 6640735..6640934 | 706..905 | 99 | <- | Minus |
| arm_2L | 6645972..6646673 | 1..705 | 99 | | Minus |
