FMO10344.5prime Sequence
1140 bp (1034 high quality bases) assembled on 2010-11-12
> FMO10344.5prime
CAGTCGACATGGCCTCCCAGGAGTTTCGCGTGGAGAGCGACACCTTTGGC
GAACTGAAGGTGCCCGCGGATAAGTACTATGGCGCCCAAACGATGCGATC
CCAGATCAATTTCCCCATCGGCGGAGCCACCGAACGGATGCCCAAACCCG
TGGTCCAGGCCATGGGCATCCTGAAGAAGGCCGCCGCCGAGGTGAACAAG
GAGTTCGGACTGGACAGCAAGGTTAGCGAGGCGATCTCGAAGGCGGCCGA
CGATGTGATCTCTGGCAAGCTATACGACGACCACTTCCCGCTGGTCATCT
GGCAGACGGGCTCGGGCACGCAGAGCAACATGAATGTGAATGAGGTGATC
AGCAATCGTGCCATTGAGCTGCTGGGCGGCAAACTGGGCTCCAAGACGCC
CGTGCATCCCAACGATCATGTGAACAAATCGCAGAGCTCCAACGATACCT
TCCCCACCGCCATTCACATCTCGGTGGCGCTGGAGCTGAACAACAACCTT
AAGCCGGCGATTAAGACGCTGCACGATGCGCTGCGTGCCAAGTCGGAGGA
GTTCAAGGACATTATCAAGATCGGACGCACGCATACGATGGATGCGGTGC
CATTGACGCTGGGCCAAGAGTTCAGCGGCTATGCCCAGCAATTGGCCTAC
GCCCAGGAGCGCATCGATGCCTGTCTGCCGCGCGTCTATGAGCTGGCTCT
GGGCGGCACTGCTGTGGGTACGGGTCTGAACACACGCAAGGGATTCGCCG
AGAAGTGCGCTGCAAAGATCGCCGAGCTGACCAGCCTGCCCTTCGTTACC
GCGCCCAACAAGTTCGAGGCACTGGCTGCCCGCGATGCCATGGTGGAGGT
GCATGGTGTGCTCAACACGATCGCCGTTAGCCTGATGAAGATTGCCAACG
ATATTCGTTTCCTTGGCTCCGGACCGCGTTGCGGTTTGGGTGAGCTCTCG
CTACCGGAGACGAGCCAGTAGCTCCATCATGCCCGGCAAGGTGATCCCAC
GCAATGCCGAGTCGCTGACATGCTCTTCCGCCCAGGTGATGGGCCATCAG
GTGGCGGTGACCATCGGTGGATCCAATGGCACTTCAAGCTGATGTATCAG
CCTGATCGTGTCAAATTGGCTGCCTCATCGCTATGGTGAT
FMO10344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0255-RB | 1668 | CG4094-RB | 119..1241 | 9..1123 | 5260 | 98.5 | Plus |
| l(1)G0255-RA | 1740 | CG4094-RA | 192..1313 | 10..1123 | 5255 | 98.5 | Plus |
| CG4095-RA | 1647 | CG4095-RA | 191..1265 | 22..1090 | 2160 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6680566..6681318 | 343..1092 | 3400 | 98.3 | Plus |
| X | 23542271 | X | 6682504..6683239 | 343..1076 | 1640 | 82.8 | Plus |
| 3L | 28110227 | 3L | 11464272..11465081 | 960..154 | 1120 | 76.2 | Minus |
| X | 23542271 | X | 6680298..6680501 | 144..347 | 1020 | 100 | Plus |
| X | 23542271 | X | 6679825..6679957 | 11..143 | 665 | 100 | Plus |
| 2L | 23513712 | 2L | 10190315..10190497 | 1007..828 | 240 | 79.2 | Minus |
| X | 23542271 | X | 6682225..6682412 | 150..334 | 230 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:09:16 has no hits.
FMO10344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:49 Download gff for
FMO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RB | 133..1267 | 1..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:11 Download gff for
FMO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RB | 111..1245 | 1..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:22 Download gff for
FMO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RB | 111..1245 | 1..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:22 Download gff for
FMO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6679817..6679957 | 1..143 | 98 | -> | Plus |
| X | 6680298..6680498 | 144..344 | 100 | -> | Plus |
| X | 6680568..6681304 | 345..1079 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:11 Download gff for
FMO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6573850..6573990 | 1..143 | 98 | -> | Plus |
| arm_X | 6574331..6574531 | 144..344 | 100 | -> | Plus |
| arm_X | 6574601..6575337 | 345..1079 | 99 | -> | Plus |
