FMO10345.5prime Sequence
1120 bp (1034 high quality bases) assembled on 2010-11-12
> FMO10345.5prime
CAGTCGACATGCTGCTGCAGCGGAACAAATTAGGCAGCGTACGGCCACCA
AAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCGGACATTGTCAT
CATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGCCGAGCGTA
TGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCAATAGGGAG
ACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATCTACATCAT
CCAAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCTTCTGATTA
TGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGGGAGTGATT
CCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGCGGCTGCAT
TGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCTGACGCACA
TCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCTTTGACATA
CCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATATATTCAAGA
GAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAATCCGGGCG
TGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTGGCCTGGCC
GTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTCGACGGTCG
GTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGCCCCAACCA
GCAGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTGTTCCGGAGCAC
ATTGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGATGTCAGTGGACG
CATCGCCATCATGGTGGATGACCTGATCGACGATGTGCAGGCCTTCGTGG
CCGCCGCTGAGATGCTGAAGGAGACGGTGCCTGCAGATATACGTGCTGGC
CACGCATGGTCTGCTTAGCCTCAGATGCACCGCGTCAGCTGGACGAGTCC
CCCATCGATGAGAATCGTTGTACCAATACCATTCCACACGAGAATCCAAA
AGCTGCATGCCATAGATCAGACGATCGACCCCTCCATTCGATCGCTGAGC
ATTCGCCGCATTCCCACAAG
FMO10345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2246-RG | 1584 | CG2246-RG | 263..1380 | 2..1113 | 5255 | 98.6 | Plus |
CG2246-RB | 1616 | CG2246-RB | 155..1272 | 2..1113 | 5255 | 98.6 | Plus |
CG2246-RK | 1508 | CG2246-RK | 73..1164 | 28..1113 | 5140 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30595040..30595328 | 554..266 | 1445 | 100 | Minus |
3R | 32079331 | 3R | 30595389..30595630 | 266..25 | 1195 | 99.6 | Minus |
3R | 32079331 | 3R | 30594818..30594984 | 721..555 | 835 | 100 | Minus |
3R | 32079331 | 3R | 30593704..30593851 | 867..720 | 740 | 100 | Minus |
3R | 32079331 | 3R | 30593489..30593636 | 1012..866 | 580 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:09:19 has no hits.
FMO10345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:50 Download gff for
FMO10345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2246-RB | 121..1247 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:13 Download gff for
FMO10345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2246-RB | 154..1280 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:24 Download gff for
FMO10345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2246-RB | 154..1280 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:24 Download gff for
FMO10345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30594818..30594984 | 555..721 | 100 | <- | Minus |
3R | 30595040..30595328 | 266..554 | 100 | <- | Minus |
3R | 30595390..30595626 | 29..265 | 100 | <- | Minus |
3R | 30601201..30601227 | 1..28 | 92 | | Minus |
3R | 30593489..30593635 | 867..1012 | 97 | <- | Minus |
3R | 30593705..30593849 | 722..866 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:13 Download gff for
FMO10345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26420540..26420706 | 555..721 | 100 | <- | Minus |
arm_3R | 26420762..26421050 | 266..554 | 100 | <- | Minus |
arm_3R | 26421112..26421348 | 29..265 | 100 | <- | Minus |
arm_3R | 26426923..26426949 | 1..28 | 92 | | Minus |
arm_3R | 26419211..26419357 | 867..1012 | 97 | <- | Minus |
arm_3R | 26419427..26419571 | 722..866 | 100 | <- | Minus |