Clone FMO10345 Report

Search the DGRC for FMO10345

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:103
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG2246-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10345.5prime Sequence

1120 bp (1034 high quality bases) assembled on 2010-11-12

> FMO10345.5prime
CAGTCGACATGCTGCTGCAGCGGAACAAATTAGGCAGCGTACGGCCACCA
AAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCGGACATTGTCAT
CATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGCCGAGCGTA
TGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCAATAGGGAG
ACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATCTACATCAT
CCAAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCTTCTGATTA
TGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGGGAGTGATT
CCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGCGGCTGCAT
TGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCTGACGCACA
TCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCTTTGACATA
CCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATATATTCAAGA
GAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAATCCGGGCG
TGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTGGCCTGGCC
GTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTCGACGGTCG
GTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGCCCCAACCA
GCAGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTGTTCCGGAGCAC
ATTGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGATGTCAGTGGACG
CATCGCCATCATGGTGGATGACCTGATCGACGATGTGCAGGCCTTCGTGG
CCGCCGCTGAGATGCTGAAGGAGACGGTGCCTGCAGATATACGTGCTGGC
CACGCATGGTCTGCTTAGCCTCAGATGCACCGCGTCAGCTGGACGAGTCC
CCCATCGATGAGAATCGTTGTACCAATACCATTCCACACGAGAATCCAAA
AGCTGCATGCCATAGATCAGACGATCGACCCCTCCATTCGATCGCTGAGC
ATTCGCCGCATTCCCACAAG

FMO10345.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-RG 1584 CG2246-RG 263..1380 2..1113 5255 98.6 Plus
CG2246-RB 1616 CG2246-RB 155..1272 2..1113 5255 98.6 Plus
CG2246-RK 1508 CG2246-RK 73..1164 28..1113 5140 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30595040..30595328 554..266 1445 100 Minus
3R 32079331 3R 30595389..30595630 266..25 1195 99.6 Minus
3R 32079331 3R 30594818..30594984 721..555 835 100 Minus
3R 32079331 3R 30593704..30593851 867..720 740 100 Minus
3R 32079331 3R 30593489..30593636 1012..866 580 97.3 Minus
Blast to na_te.dros performed on 2014-11-26 17:09:19 has no hits.

FMO10345.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:15:50 Download gff for FMO10345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 121..1247 1..1120 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:20:13 Download gff for FMO10345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 154..1280 1..1120 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:24 Download gff for FMO10345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 154..1280 1..1120 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:49:24 Download gff for FMO10345.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30594818..30594984 555..721 100 <- Minus
3R 30595040..30595328 266..554 100 <- Minus
3R 30595390..30595626 29..265 100 <- Minus
3R 30601201..30601227 1..28 92   Minus
3R 30593489..30593635 867..1012 97 <- Minus
3R 30593705..30593849 722..866 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:20:13 Download gff for FMO10345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26420540..26420706 555..721 100 <- Minus
arm_3R 26420762..26421050 266..554 100 <- Minus
arm_3R 26421112..26421348 29..265 100 <- Minus
arm_3R 26426923..26426949 1..28 92   Minus
arm_3R 26419211..26419357 867..1012 97 <- Minus
arm_3R 26419427..26419571 722..866 100 <- Minus