FMO10346.5prime Sequence
1150 bp (1047 high quality bases) assembled on 2010-11-12
> FMO10346.5prime
CAGTCGACATGAGATCGATTGCCACCAACTCCCTGCTGCCACTGATTGTG
GCCTTGCTGATCGCCGGTAGTAATGCCTCCCTCCCACGCAGGGGCAGCAG
AAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTTCAAGGTCC
TGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGCTGAAGGAG
AACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGGGCGGAGCT
GCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGGACACGAAC
CCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGAAATCCATC
TCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAGGTAAAGAG
ACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACACCGCCGTGG
CCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTTTTCACGAG
GGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCATCTTAACTG
GCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTACGGCTTTG
GAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCGACATTGAC
AAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATCGAGGAGGA
GTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGAGAGTGACT
TCGTAGTGATCGCTTCTCCTTTGACGAAGACACACAGGGCGTCTTTAATG
CCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTTAACATTGCC
AGGGGCAAAATCGTCAACCAGGATGACCTCTACGAGGCTTTGAAAGCCAA
CCGAATCTTTTCGCCGGACTCGACGTCACGGATCCGGAACATTGTCGCCC
AAGGACAAGCTGCTGACGCTTGACAATGTTGTTGTCCTGCCCATATTGGA
TCCGCCACGAAGCGCACCCGTGCCGAATGTCCACCATTGCTGCCCATATG
TGCCCGCGTTGCTGGGGAGCCCATGTTTGTCGCCGCCTAGGCAGCTTTCT
AGAGACATTCGTTTGGGCCGCGGTCAGGTAATGTTCTTATTCTAATCATA
FMO10346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RL | 1346 | CG9331-RL | 138..1233 | 4..1089 | 5180 | 98.8 | Plus |
| CG9331-RG | 1369 | CG9331-RG | 161..1256 | 4..1089 | 5180 | 98.8 | Plus |
| CG9331-RA | 1244 | CG9331-RA | 36..1131 | 4..1089 | 5180 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825571..20826087 | 4..520 | 2570 | 99.8 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 521..857 | 1640 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20827032..20827157 | 858..981 | 530 | 98.4 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 517..857 | 520 | 77.5 | Plus |
| 2L | 23513712 | 2L | 20827506..20827565 | 990..1048 | 250 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:11:45 has no hits.
FMO10346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:16:17 Download gff for
FMO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 35..1132 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:21:57 Download gff for
FMO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 34..1131 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:55 Download gff for
FMO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 34..1131 | 1..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:50:55 Download gff for
FMO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825569..20826087 | 1..520 | 99 | -> | Plus |
| 2L | 20826633..20826970 | 521..857 | 99 | -> | Plus |
| 2L | 20827032..20827157 | 858..981 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:21:57 Download gff for
FMO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20826633..20826970 | 521..857 | 99 | -> | Plus |
| arm_2L | 20827032..20827157 | 858..981 | 98 | -> | Plus |
| arm_2L | 20825569..20826087 | 1..520 | 99 | -> | Plus |
